2OZM
Crystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analog
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (T) | Template DNA | polymer | 18 | 5368.5 | 1 | Gp43 | ||
| 2 | B (P) | Primer DNA | polymer | 14 | 4304.8 | 1 | |||
| 3 | C (A) | DNA polymerase | polymer | 903 | 104655.1 | 1 | UniProt (Q38087) Pfam (PF03104) Pfam (PF00136) | Enterobacteria phage RB69 | |
| 4 | D (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 5 | E (A) | 1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO -1H-INDOLE | non-polymer | 518.2 | 1 | Chemie (N5P) | |||
| 6 | F, G, H (T, P, A) | water | water | 18.0 | 400 | Chemie (HOH) |
Sequence modifications
A: 1 - 903 (UniProt: Q38087)
| PDB | External Database | Details |
|---|---|---|
| Ala 222 | Asp 222 | engineered mutation |
| Ala 327 | Asp 327 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 114328.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 542.5 | |
| All* | Total formula weight | 114870.9 |
