2OSX
Endo-glycoceramidase II from Rhodococcus sp.: Ganglioside GM3 Complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Endoglycoceramidase II | polymer | 481 | 52080.5 | 1 | UniProt (O33853) UniProt (by SIFTS) (A0ACD6B832) | Rhodococcus sp. | |
| 2 | B (B) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 633.6 | 1 | In PDB GlyTouCan (G91237TK) | |||
| 3 | C, D, E, F (A) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) PubChem (923) | |||
| 4 | G (A) | N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE | non-polymer | 537.9 | 1 | Chemie (16C) PubChem (2498) PubChem (44119679) PubChem (2733582) PubChem (5283564) PubChem (71314645) PubChem (5353456) PubChem (11006033) PubChem (93535593) PubChem (12010537) PubChem (97038455) PubChem (101724121) PubChem (10230523) PubChem (123394372) | |||
| 5 | H (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 6 | I (A) | water | water | 18.0 | 598 | Chemie (HOH) |
Sequence modifications
A: 31 - 490 (UniProt: O33853)
| PDB | External Database | Details |
|---|---|---|
| Met 10 | - | cloning artifact |
| Gly 11 | - | cloning artifact |
| Ser 12 | - | cloning artifact |
| Ser 13 | - | cloning artifact |
| His 14 | - | expression tag |
| His 15 | - | expression tag |
| His 16 | - | expression tag |
| His 17 | - | expression tag |
| His 18 | - | expression tag |
| His 19 | - | expression tag |
| Ser 20 | - | cloning artifact |
| Ser 21 | - | cloning artifact |
| Gly 22 | - | cloning artifact |
| Leu 23 | - | cloning artifact |
| Val 24 | - | cloning artifact |
| Pro 25 | - | cloning artifact |
| Arg 26 | - | cloning artifact |
| Gly 27 | - | cloning artifact |
| Ser 28 | - | cloning artifact |
| His 29 | - | cloning artifact |
| Met 30 | - | cloning artifact |
| Ser 351 | Glu 351 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 52080.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 633.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 722.0 | |
| All* | Total formula weight | 53436.0 |
