2NNA
Structure of the MHC class II molecule HLA-DQ8 bound with a deamidated gluten peptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | MHC class II antigen | polymer | 184 | 21047.5 | 1 | UniProt (Q5Y7F5) Pfam (PF00993) Pfam (PF07654) UniProt (by SIFTS) (P01909) In PDB | Homo sapiens (human) | |
2 | B | MHC class II antigen | polymer | 207 | 23779.6 | 1 | UniProt (Q5Y7F6) Pfam (PF00969) Pfam (PF07654) UniProt (by SIFTS) (P01920) In PDB | Homo sapiens (human) | |
3 | C | gluten peptide | polymer | 18 | 2008.0 | 1 | UniProt (P18573) In PDB | ||
4 | water | water | 18.0 | 311 | Chemie (HOH) |
Sequence modifications
B: 1 - 192 (UniProt: Q5Y7F6)
C: -3 - 14 (UniProt: P18573)
PDB | External Database | Details |
---|---|---|
Gly -14 | - | expression tag |
Gly -13 | - | expression tag |
Gly -12 | - | expression tag |
Gly -11 | - | expression tag |
Ser -10 | - | expression tag |
Ile -9 | - | expression tag |
Glu -8 | - | expression tag |
Gly -7 | - | expression tag |
Arg -6 | - | expression tag |
Gly -5 | - | expression tag |
Ser -4 | - | expression tag |
Gly -3 | - | expression tag |
Gly -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu 3 | Gln 249 | conflict |
Glu 11 | Gln 257 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 46835.0 | |
All* | Total formula weight | 46835.0 |