2MTZ
Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (A) | Putative L,D-transpeptidase YkuD | polymer | 175 | 18960.7 | 1 | UniProt (O34816) Pfam (PF01476) Pfam (PF03734) | Bacillus subtilis | Spore protein YkuD |
2 | B, C, D, E, F... (B, C, D, E, F...) | intact bacterial peptidoglycan | polymer | 4 | 461.5 | 6 | Bacillus subtilis | ||
3 | H (H) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid | branched | 2888.7 | 1 | In PDB GlyTouCan (G68491YY) |
Sequence modifications
A: 5 - 167 (UniProt: O34816)
PDB | External Database | Details |
---|---|---|
Gly 1 | - | expression tag |
Arg 2 | - | expression tag |
Lys 3 | - | expression tag |
Leu 4 | - | expression tag |
Gly 168 | - | expression tag |
Ser 169 | - | expression tag |
His 170 | - | expression tag |
His 171 | - | expression tag |
His 172 | - | expression tag |
His 173 | - | expression tag |
His 174 | - | expression tag |
His 175 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 21729.5 | |
Branched | Number of molecules | 1 |
Total formula weight | 2888.7 | |
All* | Total formula weight | 24618.2 |