2J3F
L-ficolin complexed to N-acetyl-D-galactosamine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, E, F (A, B, C, E, F) | FICOLIN-2 | polymer | 219 | 24840.5 | 5 | UniProt (Q15485) Pfam (PF00147) | HOMO SAPIENS (HUMAN) | COLLAGEN/FIBRINOGEN DOMAIN-CONTAINING PROTEIN 2, FICOLIN-B, FICOLIN B, SERUM LECTIN P35, EBP-37, HUCOLIN, L-FICOLIN |
| 2 | D (D) | FICOLIN-2 | polymer | 219 | 24853.5 | 1 | UniProt (Q15485) Pfam (PF00147) | HOMO SAPIENS (HUMAN) | COLLAGEN/FIBRINOGEN DOMAIN-CONTAINING PROTEIN 2, FICOLIN-B, FICOLIN B, SERUM LECTIN P35, EBP-37, HUCOLIN, L-FICOLIN |
| 3 | G (G) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
| 4 | H (H) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 5 | I, K, N, P, T (A, B, C, E, F) | CALCIUM ION | non-polymer | 40.1 | 5 | Chemie (CA) | |||
| 6 | J, M, O, S (B, C, E, F) | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 4 | Chemie (A2G) | |||
| 7 | L, Q (B, E) | O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL | non-polymer | 324.4 | 2 | Chemie (P4C) | |||
| 8 | R (E) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 9 | U, V, W, X, Y... (A, B, C, D, E...) | water | water | 18.0 | 53 | Chemie (HOH) |
Sequence modifications
A, B, C, E, F: 70 - 288 (UniProt: Q15485)
D: 70 - 288 (UniProt: Q15485)
| PDB | External Database | Details |
|---|---|---|
| Thr 168 | Val 193 | conflict |
| Thr 247 | Val 272 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 168 | Val 193 | conflict |
| Asn 229 | Thr 254 | conflict |
| Thr 247 | Val 272 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 149055.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1481.4 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1972.3 | |
| All* | Total formula weight | 152509.4 |
