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2GBX

Crystal Structure of Biphenyl 2,3-Dioxygenase from Sphingomonas yanoikuyae B1 Bound to Biphenyl

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C, E
(A, C, E)
Biphenyl 2,3-Dioxygenase Alpha Subunitpolymer45451036.93UniProt (A2TC87)
Pfam (PF00355)
Pfam (PF00848)
Sphingobium yanoikuyae
2B, D, F
(B, D, F)
Biphenyl 2,3-Dioxygenase Beta Subunitpolymer17420786.33UniProt (A2TC88)
Pfam (PF00866)
Sphingobium yanoikuyae
3G, M, S
(A, C, E)
FE (III) IONnon-polymer55.83Chemie (FE)
4H, N, T
(A, C, E)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.83Chemie (FES)
5I, O, U
(A, C, E)
BIPHENYLnon-polymer154.23Chemie (BNL)
6J, K, L, P, Q...
(B, D, F)
ZINC IONnon-polymer65.49Chemie (ZN)
7AA, BA, CA, DA, Y...
(C, D, E, F, A...)
waterwater18.0187Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight215469.7
Non-Polymers*Number of molecules18
Total formula weight1746.3
All*Total formula weight217216.0
*Water molecules are not included.

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PDB entries from 2025-12-10

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