2DXD
Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Nucleoside diphosphate kinase | polymer | 160 | 18342.3 | 2 | UniProt (O58429) | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | NDK,NDP kinase,Nucleoside-2-P kinase |
| 2 | C, E (A, B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) PubChem (312) | |||
| 3 | D, F (A, B) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 2 | Chemie (AMP) PubChem (224) PubChem (34768) PubChem (83862) PubChem (446048) PubChem (515384) PubChem (638042) PubChem (5316444) PubChem (5742864) PubChem (12163610) PubChem (12358355) PubChem (16397049) PubChem (16760266) PubChem (40467049) PubChem (40469468) PubChem (44348067) PubChem (45358029) PubChem (46874558) PubChem (40459109) PubChem (46875232) PubChem (177678969) PubChem (6083) PubChem (1549371) PubChem (92144436) PubChem (57358045) PubChem (57879893) PubChem (57879902) PubChem (12358354) PubChem (122197642) PubChem (162290139) PubChem (162946266) PubChem (171699505) | |||
| 4 | G, H (A, B) | water | water | 18.0 | 434 | Chemie (HOH) |
Sequence modifications
A, B: 4 - 160 (UniProt: O58429)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Phe 2 | - | expression tag |
| Gln 3 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 36684.7 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 765.3 | |
| All* | Total formula weight | 37450.0 |
