2BVM
Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP, Glc and manganese ion
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | TOXIN B | polymer | 542 | 62924.4 | 1 | UniProt (P18177) | CLOSTRIDIUM DIFFICILE | |
| 2 | B (A) | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) PubChem (27854) | |||
| 3 | C (A) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 1 | Chemie (UDP) PubChem (1158) PubChem (6031) PubChem (25323044) PubChem (25323048) PubChem (44298965) PubChem (53486216) PubChem (3084486) PubChem (60098857) PubChem (57448939) PubChem (6101632) PubChem (6604175) PubChem (91746160) PubChem (92332560) PubChem (92332561) PubChem (92332562) PubChem (92332563) PubChem (11811538) PubChem (93088131) PubChem (93630083) PubChem (12049241) | |||
| 4 | D (A) | alpha-D-glucopyranose | non-polymer | 180.2 | 1 | Chemie (GLC) | |||
| 5 | E (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | F (A) | water | water | 18.0 | 129 | Chemie (HOH) |
Sequence modifications
A: 1 - 1 (PDB: 2BVM)
A: 2 - 542 (UniProt: P18177)
A: 2 - 542 (UniProt: P18177)
| PDB | External Database | Details |
|---|---|---|
| Cys 59 | Tyr 58 | engineered mutation |
| Gly 244 | Glu 243 | engineered mutation |
| Ala 542 | Ser 541 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 62924.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 735.3 | |
| All* | Total formula weight | 63659.7 |
