25QC
Crystal structure of Pseudomonas phage YuA Pplase2 in complex with 5hmdU-DNA and glycine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Amino acid:DNA transferase domain-containing protein | polymer | 292 | 33572.1 | 1 | UniProt (A9J505) | Pseudomonas virus Yua | |
| 2 | B (B) | DNA (5'-D(P*CP*GP*AP*TP*(5HU)P*GP*CP*CP*CP*AP*TP*CP*G)-3') | polymer | 13 | 3943.6 | 1 | synthetic construct | ||
| 3 | C (A) | octyl beta-D-glucopyranoside | non-polymer | 292.4 | 1 | Chemie (BOG) PubChem (62852) | |||
| 4 | D, E, G, H (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 5 | F (A) | GLYCINE | non-polymer | 75.1 | 1 | Chemie (GLY) PubChem (750) | |||
| 6 | I (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) PubChem (312) | |||
| 7 | J (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) | |||
| 8 | K, L (A, B) | water | water | 18.0 | 117 | Chemie (HOH) |
Sequence modifications
A: 2 - 291 (UniProt: A9J505)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 37515.7 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 675.5 | |
| All* | Total formula weight | 38191.2 |
