23WI
Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (a) | RNA (1539-MER) | polymer | 1539 | 498909.8 | 1 | GenBank (2971070070) | Escherichia coli | |
| 2 | B (b) | Small ribosomal subunit protein uS2 | polymer | 218 | 24253.9 | 1 | UniProt (P0A7V0) | Escherichia coli | 30S ribosomal protein S2 |
| 3 | C (c) | Small ribosomal subunit protein uS3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) | Escherichia coli | 30S ribosomal protein S3 |
| 4 | D (d) | Small ribosomal subunit protein uS4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) | Escherichia coli | 30S ribosomal protein S4 |
| 5 | E (e) | Small ribosomal subunit protein uS5 | polymer | 157 | 16532.1 | 1 | UniProt (P0A7W3) | Escherichia coli | 30S ribosomal protein S5 |
| 6 | F (f) | Small ribosomal subunit protein bS6, non-modified isoform | polymer | 100 | 11669.4 | 1 | UniProt (P02358) | Escherichia coli | |
| 7 | G (g) | Small ribosomal subunit protein uS7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) | Escherichia coli | 30S ribosomal protein S7 |
| 8 | H (h) | Small ribosomal subunit protein uS8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) | Escherichia coli | 30S ribosomal protein S8 |
| 9 | I (i) | Small ribosomal subunit protein uS9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) | Escherichia coli | 30S ribosomal protein S9 |
| 10 | J (j) | Small ribosomal subunit protein uS10 | polymer | 98 | 11197.0 | 1 | UniProt (P0A7R5) | Escherichia coli | 30S ribosomal protein S10,Transcription termination/antitermination protein NusE |
| 11 | K (k) | Small ribosomal subunit protein uS11 | polymer | 116 | 12388.1 | 1 | UniProt (P0A7R9) | Escherichia coli | 30S ribosomal protein S11 |
| 12 | L (l) | Small ribosomal subunit protein uS12 | polymer | 123 | 13637.0 | 1 | UniProt (P0A7S3) | Escherichia coli | 30S ribosomal protein S12 |
| 13 | M (m) | Small ribosomal subunit protein uS13 | polymer | 114 | 12625.8 | 1 | UniProt (P0A7S9) | Escherichia coli | 30S ribosomal protein S13 |
| 14 | N (n) | Small ribosomal subunit protein uS14 | polymer | 101 | 11546.4 | 1 | UniProt (P0AG59) | Escherichia coli | 30S ribosomal protein S14 |
| 15 | O (o) | Small ribosomal subunit protein uS15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) | Escherichia coli | 30S ribosomal protein S15 |
| 16 | P (p) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) | Escherichia coli | Small ribosomal subunit protein bS16 |
| 17 | Q (q) | Small ribosomal subunit protein uS17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) | Escherichia coli | 30S ribosomal protein S17 |
| 18 | R (r) | Small ribosomal subunit protein bS18 | polymer | 65 | 7606.8 | 1 | UniProt (P0A7T7) | Escherichia coli | 30S ribosomal protein S18 |
| 19 | S (s) | Small ribosomal subunit protein uS19 | polymer | 79 | 9057.6 | 1 | UniProt (P0A7U3) | Escherichia coli | 30S ribosomal protein S19 |
| 20 | T (t) | Small ribosomal subunit protein bS20 | polymer | 85 | 9506.2 | 1 | UniProt (P0A7U7) | Escherichia coli | 30S ribosomal protein S20 |
| 21 | U (u) | Small ribosomal subunit protein bS21 | polymer | 65 | 7763.1 | 1 | UniProt (P68679) | Escherichia coli | 30S ribosomal protein S21 |
| 22 | V (A) | 16S rRNA | polymer | 886 | 287549.8 | 1 | GenBank (2962093202) | Escherichia coli | |
| 23 | W (B) | 30S ribosomal protein S | polymer | 120 | 38813.1 | 1 | GenBank (1108609475) | Escherichia coli | |
| 24 | X (C) | Large ribosomal subunit protein uL2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) | Escherichia coli | 50S ribosomal protein L2 |
| 25 | Y (D) | Large ribosomal subunit protein uL3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) | Escherichia coli | 50S ribosomal protein L3 |
| 26 | Z (E) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) | Escherichia coli | Large ribosomal subunit protein uL4 |
| 27 | AA (F) | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) | Escherichia coli | Large ribosomal subunit protein uL5 |
| 28 | BA (G) | Large ribosomal subunit protein uL6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) | Escherichia coli | 50S ribosomal protein L6 |
| 29 | CA (J) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) | Escherichia coli | Large ribosomal subunit protein uL13 |
| 30 | DA (K) | Large ribosomal subunit protein uL14 | polymer | 122 | 13451.9 | 1 | UniProt (P0ADY3) | Escherichia coli | 50S ribosomal protein L14 |
| 31 | EA (L) | Large ribosomal subunit protein uL15 | polymer | 143 | 14877.3 | 1 | UniProt (P02413) | Escherichia coli | 50S ribosomal protein L15 |
| 32 | FA (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 33 | GA (N) | Large ribosomal subunit protein bL17 | polymer | 120 | 13721.9 | 1 | UniProt (P0AG44) | Escherichia coli | 50S ribosomal protein L17 |
| 34 | HA (O) | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (P0C018) | Escherichia coli | Large ribosomal subunit protein uL18 |
| 35 | IA (P) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) | Escherichia coli | Large ribosomal subunit protein bL19 |
| 36 | JA (Q) | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) | Escherichia coli | Large ribosomal subunit protein bL20 |
| 37 | KA (R) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) | Escherichia coli | Large ribosomal subunit protein bL21 |
| 38 | LA (S) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) | Escherichia coli | Large ribosomal subunit protein uL22 |
| 39 | MA (T) | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 1 | UniProt (P0ADZ0) | Escherichia coli | Large ribosomal subunit protein uL23 |
| 40 | NA (U) | Large ribosomal subunit protein uL24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) | Escherichia coli | 50S ribosomal protein L24 |
| 41 | OA (V) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) | Escherichia coli | Large ribosomal subunit protein bL25 |
| 42 | PA (W) | 50S ribosomal protein L27 | polymer | 75 | 8174.4 | 1 | UniProt (P0A7L8) | Escherichia coli | Large ribosomal subunit protein bL27 |
| 43 | QA (X) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) | Escherichia coli | Large ribosomal subunit protein bL28 |
| 44 | RA (Y) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) | Escherichia coli | 50S ribosomal protein L29 |
| 45 | SA (Z) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) | Escherichia coli | Large ribosomal subunit protein uL30 |
| 46 | TA (0) | Large ribosomal subunit protein bL32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) | Escherichia coli | 50S ribosomal protein L32 |
| 47 | UA (1) | 50S ribosomal protein L33 | polymer | 50 | 5814.8 | 1 | UniProt (P0A7N9) | Escherichia coli | Large ribosomal subunit protein bL33 |
| 48 | VA (2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) | Escherichia coli | Large ribosomal subunit protein bL34 |
| 49 | WA (3) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 50 | XA (4) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) | Escherichia coli | Large ribosomal subunit protein bL36-A,Ribosomal protein B |
| 51 | YA (6) | Large ribosomal subunit protein bL31 | polymer | 66 | 7516.7 | 1 | UniProt (P0A7M9) | Escherichia coli | 50S ribosomal protein L31 |
| 52 | ZA (5) | RNA (2014-MER) | polymer | 2014 | 652996.4 | 1 | Escherichia coli | ||
| 53 | AB, AC, AD, AE, AF... (a, A, D, 5, E...) | MAGNESIUM ION | non-polymer | 24.3 | 328 | Chemie (MG) PubChem (888) | |||
| 54 | AK, WC (5, a) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) PubChem (312) | |||
| 55 | EM, TG (5, B) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) PubChem (923) | |||
| 56 | EH, FH (4, 6) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) | |||
| 57 | AO, WN, XN, YN, ZN (5, a, A, D, K) | water | water | 18.0 | 21 | Chemie (HOH) |
Sequence modifications
n: 1 - 101 (UniProt: P0AG59)
A: 1 - 886 (GenBank: 2962093202)
| PDB | External Database | Details |
|---|---|---|
| Ala 35 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| 5mc 747 | U 459031 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 52 |
| Total formula weight | 2095596.6 | |
| Non-Polymers* | Number of molecules | 334 |
| Total formula weight | 8219.7 | |
| All* | Total formula weight | 2103816.4 |
