22OV
SARS-CoV-2 BA.3.2.2(RE.2.2) spike protein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1241 | 138486.8 | 3 | UniProt (P0DTC2) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | AA, D, DA, E, EA... (a, D, d, E, e...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | BA, CA, F, FA, H... (b, c, F, f, H...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 24 | In PDB GlyTouCan (G15407YE) | |||
| 4 | G, GA, T (G, g, T) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G42227JK) | |||
| 5 | AB, BB, CB, DB, EB... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) PubChem (24139) |
Sequence modifications
A, B, C: 1 - 1217 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Leu 9 | Pro 9 | conflict |
| Thr 21 | Arg 21 | conflict |
| Leu 26 | Pro 26 | conflict |
| Val 67 | Ala 67 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 95 | Thr 95 | conflict |
| Thr 101 | Ile 101 | conflict |
| - | Cys 136 | deletion |
| - | Asn 137 | deletion |
| - | Asp 138 | deletion |
| - | Pro 139 | deletion |
| - | Phe 140 | deletion |
| - | Leu 141 | deletion |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| - | Tyr 145 | deletion |
| - | His 146 | deletion |
| - | Lys 147 | deletion |
| Ser 157 | Phe 157 | conflict |
| Lys 164 | Asn 164 | conflict |
| Phe 172 | Ser 172 | conflict |
| Thr 187 | Lys 187 | conflict |
| - | Asn 211 | deletion |
| Ile 212 | Leu 212 | conflict |
| - | Leu 242 | deletion |
| - | Ala 243 | deletion |
| Ser 251 | Pro 251 | conflict |
| Val 326 | Ile 326 | conflict |
| Tyr 339 | Gly 339 | conflict |
| Pro 348 | Ala 348 | conflict |
| Thr 356 | Lys 356 | conflict |
| Phe 371 | Ser 371 | conflict |
| Pro 373 | Ser 373 | conflict |
| Phe 375 | Ser 375 | conflict |
| Lys 403 | Arg 403 | conflict |
| Asn 405 | Asp 405 | conflict |
| Ser 408 | Arg 408 | conflict |
| Asn 417 | Lys 417 | conflict |
| Ser 435 | Ala 435 | conflict |
| Arg 440 | Asn 440 | conflict |
| Ala 445 | Val 445 | conflict |
| Asp 446 | Gly 446 | conflict |
| Trp 452 | Leu 452 | conflict |
| Lys 460 | Asn 460 | conflict |
| Asn 477 | Ser 477 | conflict |
| Asn 478 | Thr 478 | conflict |
| Lys 484 | Glu 484 | conflict |
| Ser 496 | Gly 496 | conflict |
| Arg 498 | Gln 498 | conflict |
| Tyr 501 | Asn 501 | conflict |
| Asn 529 | Lys 529 | conflict |
| Asp 554 | Glu 554 | conflict |
| Ser 575 | Ala 575 | conflict |
| Asp 583 | Glu 583 | conflict |
| Gly 614 | Asp 614 | conflict |
| Arg 625 | His 625 | conflict |
| Lys 641 | Asn 641 | conflict |
| Gly 642 | Val 642 | conflict |
| Lys 654 | Glu 654 | conflict |
| Tyr 655 | His 655 | conflict |
| Arg 679 | Asn 679 | conflict |
| His 681 | Pro 681 | conflict |
| Asp 688 | Ala 688 | conflict |
| Leu 704 | Ser 704 | conflict |
| Lys 764 | Asn 764 | conflict |
| Thr 795 | Lys 795 | conflict |
| Tyr 796 | Asp 796 | conflict |
| Pro 817 | Phe 817 | conflict |
| Lys 852 | Ala 852 | conflict |
| Pro 892 | Ala 892 | conflict |
| Pro 899 | Ala 899 | conflict |
| Phe 939 | Ser 939 | conflict |
| Pro 942 | Ala 942 | conflict |
| His 954 | Gln 954 | conflict |
| Lys 969 | Asn 969 | conflict |
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Glu 1184 | Asp 1184 | conflict |
| Gly 1218 | - | expression tag |
| Gly 1219 | - | expression tag |
| Ser 1220 | - | expression tag |
| Gly 1221 | - | expression tag |
| Gly 1222 | - | expression tag |
| Gly 1223 | - | expression tag |
| Ser 1224 | - | expression tag |
| Gly 1225 | - | expression tag |
| Tyr 1226 | - | expression tag |
| Ile 1227 | - | expression tag |
| Pro 1228 | - | expression tag |
| Glu 1229 | - | expression tag |
| Ala 1230 | - | expression tag |
| Pro 1231 | - | expression tag |
| Arg 1232 | - | expression tag |
| Asp 1233 | - | expression tag |
| Gly 1234 | - | expression tag |
| Gln 1235 | - | expression tag |
| Ala 1236 | - | expression tag |
| Tyr 1237 | - | expression tag |
| Val 1238 | - | expression tag |
| Arg 1239 | - | expression tag |
| Lys 1240 | - | expression tag |
| Asp 1241 | - | expression tag |
| Gly 1242 | - | expression tag |
| Glu 1243 | - | expression tag |
| Trp 1244 | - | expression tag |
| Val 1245 | - | expression tag |
| Leu 1246 | - | expression tag |
| Leu 1247 | - | expression tag |
| Ser 1248 | - | expression tag |
| Thr 1249 | - | expression tag |
| Phe 1250 | - | expression tag |
| Leu 1251 | - | expression tag |
| Gly 1252 | - | expression tag |
| His 1253 | - | expression tag |
| His 1254 | - | expression tag |
| His 1255 | - | expression tag |
| His 1256 | - | expression tag |
| His 1257 | - | expression tag |
| His 1258 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 415460.3 | |
| Branched | Number of molecules | 39 |
| Total formula weight | 21902.3 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 5309.0 | |
| All* | Total formula weight | 442671.6 |
