21ZW
Cdc48-Ufd1-Npl4 complex processing polyUbEOS in the presence of ubx2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Ubiquitin fusion degradation protein 1 | polymer | 361 | 39857.3 | 1 | UniProt (P53044) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | UB fusion protein 1,Polymerase-interacting protein 3 |
| 2 | B, C, D, E, F... (A, G, H, I, J...) | Cell division control protein 48 | polymer | 835 | 92105.9 | 6 | UniProt (P25694) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Cell division cycle protein 48,Transitional endoplasmic reticulum ATPase homolog |
| 3 | H, J, K, L (L, C, D, E) | Ubiquitin | polymer | 76 | 8576.8 | 4 | UniProt (P62979) | Homo sapiens (human) | Donor Ub |
| 4 | I (M) | Nuclear protein localization protein 4 | polymer | 580 | 65938.2 | 1 | UniProt (P33755) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | HMG-CoA reductase degradation protein 4 |
| 5 | M, N, O, P, Q... (A, G, H, J, K) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 6 | Chemie (ATP) | Homo sapiens | ||
| 6 | S, T (M) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) |
Sequence modifications
A, G, H, I, J, K: 1 - 835 (UniProt: P25694)
M: 1 - 580 (UniProt: P33755)
| PDB | External Database | Details |
|---|---|---|
| Gln 588 | Glu 588 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Phe 494 | Ala 494 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 692738.3 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 3173.9 | |
| All* | Total formula weight | 695912.2 |
