21ZV
Cdc48-Ufd1-Npl4 complex processing Ub6 in the presence of ubx2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Ubiquitin fusion degradation protein 1 | polymer | 361 | 39857.3 | 1 | UniProt (P53044) | Saccharomyces cerevisiae S288C | UB fusion protein 1,Polymerase-interacting protein 3 |
| 2 | B, D, F, N (C, L, N, O) | Ubiquitin | polymer | 76 | 8576.8 | 4 | UniProt (P62979) | Homo sapiens (human) | Donor Ub |
| 3 | C (D) | UBX domain-containing protein 2 | polymer | 584 | 66842.1 | 1 | UniProt (Q04228) | Saccharomyces cerevisiae S288C | Secretion lowering protein 1 |
| 4 | E, G, H, I, J... (A, G, P, H, I...) | Cell division control protein 48 | polymer | 835 | 92105.9 | 7 | UniProt (P25694) | Saccharomyces cerevisiae S288C | Cell division cycle protein 48,Transitional endoplasmic reticulum ATPase homolog |
| 5 | M (M) | Nuclear protein localization protein 4 | polymer | 580 | 65938.2 | 1 | UniProt (P33755) | Saccharomyces cerevisiae S288C | HMG-CoA reductase degradation protein 4 |
| 6 | O, P, Q, R, S... (A, G, H, J, K) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 6 | Chemie (ATP) | |||
| 7 | U, V (M) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) |
Sequence modifications
A, G, P, H, I, J, K: 1 - 835 (UniProt: P25694)
M: 1 - 580 (UniProt: P33755)
| PDB | External Database | Details |
|---|---|---|
| Gln 588 | Glu 588 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Phe 494 | Ala 494 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 851686.3 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 3173.9 | |
| All* | Total formula weight | 854860.3 |
