21WV

In situ structure of the C2S2M2L4-type PSII-LHCII supercomplex from Oryza sativa

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, F, FB... (00, 01, 02, 05, 06...)	Chlorophyll a-b binding protein 2, chloroplastic	polymer	219	23441.5	14	UniProt (P12331)	Oryza sativa Japonica Group (Japanese rice)	LHCII type I CAB-2,LHCP
2	D, H (03, 07)	Chlorophyll a/b-binding protein	polymer	220	24065.3	2	UniProt (B7E6H8)	Oryza sativa Japonica Group (Japanese rice)	cDNA clone:001-013-D02,full insert sequence,cDNA clone:001-019-D10,cDNA clone:001-203-F03,cDNA clone:001-206-G05,cDNA clone:006-301-C07,cDNA clone:006-302-C03,cDNA clone:006-306-E11,cDNA clone:006-309-G12
3	E, I (04, 08)	Chlorophyll a-b binding protein, chloroplastic	polymer	205	22550.6	2	UniProt (Q7XV11)	Oryza sativa Japonica Group (Japanese rice)
4	L, O, R, SB (12, 15, 18, 21)	Chlorophyll a-b binding protein, chloroplastic	polymer	222	24045.2	4	UniProt (Q10HD0)	Oryza sativa Japonica Group (Japanese rice)	LHCII type I CAB,LHCP
5	M, P, S, TB (13, 16, 19, 22)	Chlorophyll a-b binding protein 1, chloroplastic	polymer	218	23368.4	4	UniProt (P12330)	Oryza sativa Japonica Group (Japanese rice)	LHCII type I CAB-1,LHCP
6	SA, T (1A, 1a)	Photosystem II protein D1	polymer	334	36917.0	2	UniProt (P0C432)	Oryza sativa Japonica Group (Japanese rice)	PSII D1 protein,Photosystem II Q(B) protein
7	TA, U (1B, 1b)	Photosystem II CP47 reaction center protein	polymer	503	55632.1	2	UniProt (P0C362)	Oryza sativa Japonica Group (Japanese rice)	PSII 47 kDa protein,Protein CP-47
8	UA, V (1C, 1c)	Photosystem II CP43 reaction center protein	polymer	450	49289.4	2	UniProt (P0C365)	Oryza sativa Japonica Group (Japanese rice)	PSII 43 kDa protein,Protein CP-43
9	VA, W (1D, 1d)	Photosystem II D2 protein	polymer	341	38268.6	2	UniProt (P0C435)	Oryza sativa Japonica Group (Japanese rice)	PSII D2 protein,Photosystem Q(A) protein
10	WA, X (1E, 1e)	Cytochrome b559 subunit alpha	polymer	75	8654.7	2	UniProt (P0C368)	Oryza sativa Japonica Group (Japanese rice)	PSII reaction center subunit V
11	XA, Y (1F, 1f)	Cytochrome b559 subunit beta	polymer	35	4027.8	2	UniProt (P0C401)	Oryza sativa Japonica Group (Japanese rice)	PSII reaction center subunit VI
12	AA, ZA (1H, 1h)	Photosystem II reaction center protein H	polymer	60	6472.6	2	UniProt (P0C420)	Oryza sativa Japonica Group (Japanese rice)	PSII-H,Photosystem II 10 kDa phosphoprotein
13	AB, BA (1I, 1i)	Photosystem II reaction center protein I	polymer	34	3912.7	2	UniProt (P0C405)	Oryza sativa Japonica Group (Japanese rice)	PSII-I,PSII 4.8 kDa protein
14	BB, CA (1J, 1j)	Photosystem II reaction center protein J	polymer	35	3586.2	2	UniProt (P0C414)	Oryza sativa Japonica Group (Japanese rice)	PSII-J
15	CB, DA (1K, 1k)	Photosystem II reaction center protein K	polymer	37	4273.1	2	UniProt (P0C408)	Oryza sativa Japonica Group (Japanese rice)	PSII-K
16	DB, EA (1L, 1l)	Photosystem II reaction center protein L	polymer	36	4265.8	2	UniProt (P60137)	Oryza sativa Japonica Group (Japanese rice)	PSII-L
17	EB, FA (1M, 1m)	Photosystem II reaction center protein M	polymer	33	3668.5	2	UniProt (P0C411)	Oryza sativa Japonica Group (Japanese rice)	PSII-M
18	GB, HA (1O, 1o)	33 kDa subunit of oxygen evolving system of photosystem II	polymer	248	26609.8	2	UniProt (Q943W1)	Oryza sativa Japonica Group (Japanese rice)	33 kDa thylakoid membrane protein,OEC 33 kDa subunit
19	HB, IA (1P, 1p)	23 kDa subunit of oxygen evolving system of photosystem II	polymer	186	20122.3	2	UniProt (Q8GTK4)	Oryza sativa Japonica Group (Japanese rice)	23 kDa thylakoid membrane protein,OEC 23 kDa subunit
20	IB, JA (1R, 1r)	Chlorophyll a-b binding protein, chloroplastic	polymer	234	25938.3	2	UniProt (Q6Z411)	Oryza sativa Japonica Group (Japanese rice)
21	JB, KA (1S, 1s)	Chlorophyll a-b binding protein, chloroplastic	polymer	218	23719.9	2	UniProt (Q53N83)	Oryza sativa Japonica Group (Japanese rice)	Chlorophyll a-b binding protein CP26, chloroplastic
22	KB, LA (1T, 1t)	Photosystem II reaction center protein T	polymer	32	3692.5	2	UniProt (P0C427)	Oryza sativa Japonica Group (Japanese rice)	PSII-T
23	LB, MA (1U, 1u)	Os02g0581100 protein	polymer	27	3009.6	2	UniProt (Q0E032)	Oryza sativa Japonica Group (Japanese rice)
24	MB, NA (1V, 1v)	Photosystem II 10 kDa polypeptide, chloroplastic	polymer	105	10861.4	2	UniProt (Q8H4P7)	Oryza sativa Japonica Group (Japanese rice)
25	NB, OA (1W, 1w)	Photosystem II reaction center W protein, chloroplastic	polymer	54	5866.5	2	UniProt (Q5ZBY9)	Oryza sativa Japonica Group (Japanese rice)	PSII 6.1 kDa protein
26	OB, PA (1X, 1x)	Os07g0673550 protein	polymer	39	3927.7	2	UniProt (Q7EXX2)	Oryza sativa Japonica Group (Japanese rice)	Ultraviolet-B-repressible protein,Photosystem II reaction centre X protein containing protein, expressed
27	PB, QA (1Y, 1y)	Os08g0119800 protein	polymer	36	4061.8	2	UniProt (Q6ZJ41)	Oryza sativa Japonica Group (Japanese rice)	cDNA clone:001-024-H10,full insert sequence,cDNA clone:J013109P06,cDNA clone:J013136L01,Os08g0119800 protein Photosystem II core complex proteins psbY, chloroplastic
28	QB, RA (1Z, 1z)	Photosystem II reaction center protein Z	polymer	62	6582.8	2	UniProt (P0C429)	Oryza sativa Japonica Group (Japanese rice)	PSII-Z
29	AD, AE, AL, AN, AP... (01, 03, 1G, 1R, 1b...)	CHLOROPHYLL A	non-polymer		893.5	213	Chemie (CLA)
30	AC, AF, AG, AH, AM... (00, 05, 07, 09, 1N...)	CHLOROPHYLL B	non-polymer		907.5	92	Chemie (CHL)
31	AO, BO, CD, DD, FE... (1S, 01, 03, 00, 1R...)	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	21	Chemie (LUT) PubChem (448437)
32	IC, JH (00, 09)	(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL	non-polymer		430.7	2	Chemie (VIV) PubChem (14985)
33	AK, AS, AT, BK, CO... (1C, 1g, 1n, 1S, 01...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	66	Chemie (LHG)
34	AI, AJ, BJ, DO, NC... (1A, 1B, 1S, 00, 1c...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	13	Chemie (DGD) PubChem (15991538)
35	CS, DR, DS, EJ, ES... (1h, 1d, 1i, 1B, 1j...)	BETA-CAROTENE	non-polymer		536.9	23	Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668)
36	MO, NH (1a, 1A)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
37	AQ, NO, OH, PH (1c, 1a, 1A)	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL) PubChem (312)
38	QO, RH, SH, YQ (1a, 1A, 1d)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
39	LO, UH (1a, 1A)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
40	BT, ER, GR, MK, SM... (1r, 1d, 1e, 1D, 1R...)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	8	Chemie (PL9)
41	CJ, DJ, FR, IS, JS... (1B, 1d, 1l, 1m, 1S...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	23	Chemie (SQD) PubChem (25147486)
42	CK, GS, LU, XI, YI (1C, 1k, 1s, 1B)	(1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY)METHYL]ETHYL PALMITATE	non-polymer		689.0	5	Chemie (MGE) PubChem (5327038)
43	SJ, TJ, ZP (1C, 1c)	ALPHA-LINOLENIC ACID	non-polymer		278.4	3	Chemie (LNL) PubChem (5280934)
44	CR, IK (1d, 1D)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
45	IR, VK (1f, 1E)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)
46	BS, HN, NL, PL, QT... (1g, 1R, 1G, 1r)	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	6	Chemie (XAT) PubChem (448438)
47	HO (1X)	1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE	non-polymer		705.0	1	Chemie (3PH) PubChem (447938)

Sequence modifications

1O, 1o: 1 - 247 (UniProt: Q943W1)

PDB	External Database	Details
Ser 248	-	insertion

Contents of the asymmetric unit

Polymers	Number of chains	72
	Total formula weight	1317788.9
Non-Polymers*	Number of molecules	492
	Total formula weight	397657.9
All*	Total formula weight	1715446.8

*Water molecules are not included.