21WI
In situ structure of the trans-lumenal/trans-stromal PSII-LHCII trimer (TL-TS trimer) from Oryza sativa
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, B, C, ED... (00, 01, 02, 05, 06...) | Chlorophyll a-b binding protein 2, chloroplastic | polymer | 219 | 23441.5 | 30 | UniProt (P12331) | Oryza sativa Japonica Group (Japanese rice) | LHCII type I CAB-2,LHCP |
| 2 | D, H, N, R, TD... (03, 07, 13, 17, 33...) | Chlorophyll a/b-binding protein | polymer | 220 | 24065.3 | 6 | UniProt (B7E6H8) | Oryza sativa Japonica Group (Japanese rice) | cDNA clone:001-013-D02,full insert sequence,cDNA clone:001-019-D10,cDNA clone:001-203-F03,cDNA clone:001-206-G05,cDNA clone:006-301-C07,cDNA clone:006-302-C03,cDNA clone:006-306-E11,cDNA clone:006-309-G12 |
| 3 | E, I, O, S, UD... (04, 08, 14, 18, 34...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 205 | 22550.6 | 6 | UniProt (Q7XV11) | Oryza sativa Japonica Group (Japanese rice) | |
| 4 | AE, RC, SB, TA, U... (1A, 1a, 2A, 2a, 3A...) | Photosystem II protein D1 | polymer | 334 | 36917.0 | 6 | UniProt (P0C432) | Oryza sativa Japonica Group (Japanese rice) | PSII D1 protein,Photosystem II Q(B) protein |
| 5 | AF, BE, SC, TB, UA... (1B, 1b, 2B, 2b, 3B...) | Photosystem II CP47 reaction center protein | polymer | 503 | 55632.1 | 6 | UniProt (P0C362) | Oryza sativa Japonica Group (Japanese rice) | PSII 47 kDa protein,Protein CP-47 |
| 6 | BF, CE, TC, UB, VA... (1C, 1c, 2C, 2c, 3C...) | Photosystem II CP43 reaction center protein | polymer | 450 | 49289.4 | 6 | UniProt (P0C365) | Oryza sativa Japonica Group (Japanese rice) | PSII 43 kDa protein,Protein CP-43 |
| 7 | CF, DE, UC, VB, WA... (1D, 1d, 2D, 2d, 3D...) | Photosystem II D2 protein | polymer | 341 | 38268.6 | 6 | UniProt (P0C435) | Oryza sativa Japonica Group (Japanese rice) | PSII D2 protein,Photosystem Q(A) protein |
| 8 | DF, EE, VC, WB, XA... (1E, 1e, 2E, 2e, 3E...) | Cytochrome b559 subunit alpha | polymer | 75 | 8654.7 | 6 | UniProt (P0C368) | Oryza sativa Japonica Group (Japanese rice) | PSII reaction center subunit V |
| 9 | EF, FE, WC, XB, YA... (1F, 1f, 2F, 2f, 3F...) | Cytochrome b559 subunit beta | polymer | 36 | 4142.9 | 6 | UniProt (P0C399) | Oryza sativa Japonica Group (Japanese rice) | PSII reaction center subunit VI |
| 10 | AB, BA, GF, HE, YC... (1H, 1h, 2H, 2h, 3H...) | Photosystem II reaction center protein H | polymer | 60 | 6472.6 | 6 | UniProt (P0C420) | Oryza sativa Japonica Group (Japanese rice) | PSII-H,Photosystem II 10 kDa phosphoprotein |
| 11 | AC, BB, CA, HF, IE... (1I, 1i, 2I, 2i, 3I...) | Photosystem II reaction center protein I | polymer | 34 | 3912.7 | 6 | UniProt (P0C405) | Oryza sativa Japonica Group (Japanese rice) | PSII-I,PSII 4.8 kDa protein |
| 12 | AD, BC, CB, DA, IF... (1J, 1j, 2J, 2j, 3J...) | Photosystem II reaction center protein J | polymer | 35 | 3586.2 | 6 | UniProt (P0C414) | Oryza sativa Japonica Group (Japanese rice) | PSII-J |
| 13 | BD, CC, DB, EA, JF... (1K, 1k, 2K, 2k, 3K...) | Photosystem II reaction center protein K | polymer | 37 | 4273.1 | 6 | UniProt (P0C408) | Oryza sativa Japonica Group (Japanese rice) | PSII-K |
| 14 | CD, DC, EB, FA, KF... (1L, 1l, 2L, 2l, 3L...) | Photosystem II reaction center protein L | polymer | 37 | 4366.9 | 6 | UniProt (P0C416) | Oryza sativa Japonica Group (Japanese rice) | PSII-L |
| 15 | DD, EC, FB, GA, LF... (1M, 1m, 2M, 2m, 3M...) | Photosystem II reaction center protein M | polymer | 33 | 3668.5 | 6 | UniProt (P0C411) | Oryza sativa Japonica Group (Japanese rice) | PSII-M |
| 16 | FD, GC, HB, IA, NF... (1O, 1o, 2O, 2o, 3O...) | 33 kDa subunit of oxygen evolving system of photosystem II | polymer | 248 | 26609.8 | 6 | UniProt (Q943W1) | Oryza sativa Japonica Group (Japanese rice) | 33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 17 | GD, HC, IB, JA, OF... (1P, 1p, 2P, 2p, 3P...) | 23 kDa subunit of oxygen evolving system of photosystem II | polymer | 186 | 20122.3 | 6 | UniProt (Q8GTK4) | Oryza sativa Japonica Group (Japanese rice) | 23 kDa thylakoid membrane protein,OEC 23 kDa subunit |
| 18 | HD, IC, JB, KA, PF... (1R, 1r, 2R, 2r, 3R...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 234 | 25938.3 | 6 | UniProt (Q6Z411) | Oryza sativa Japonica Group (Japanese rice) | |
| 19 | ID, JC, KB, LA, QF... (1S, 1s, 2S, 2s, 3S...) | Chlorophyll a-b binding protein, chloroplastic | polymer | 218 | 23719.9 | 6 | UniProt (Q53N83) | Oryza sativa Japonica Group (Japanese rice) | Chlorophyll a-b binding protein CP26, chloroplastic |
| 20 | JD, KC, LB, MA, RF... (1T, 1t, 2T, 2t, 3T...) | Photosystem II reaction center protein T | polymer | 32 | 3692.5 | 6 | UniProt (P0C427) | Oryza sativa Japonica Group (Japanese rice) | PSII-T |
| 21 | KD, LC, MB, NA, SF... (1U, 1u, 2U, 2u, 3U...) | Os02g0581100 protein | polymer | 27 | 3009.6 | 6 | UniProt (Q0E032) | Oryza sativa Japonica Group (Japanese rice) | |
| 22 | LD, MC, NB, OA, TF... (1V, 1v, 2V, 2v, 3V...) | Photosystem II 10 kDa polypeptide, chloroplastic | polymer | 105 | 10861.4 | 6 | UniProt (Q8H4P7) | Oryza sativa Japonica Group (Japanese rice) | |
| 23 | MD, NC, OB, PA, UF... (1W, 1w, 2W, 2w, 3W...) | Photosystem II reaction center W protein, chloroplastic | polymer | 54 | 5866.5 | 6 | UniProt (Q5ZBY9) | Oryza sativa Japonica Group (Japanese rice) | PSII 6.1 kDa protein |
| 24 | ND, OC, PB, QA, VF... (1X, 1x, 2X, 2x, 3X...) | Os07g0673550 protein | polymer | 39 | 3927.7 | 6 | UniProt (Q7EXX2) | Oryza sativa Japonica Group (Japanese rice) | Ultraviolet-B-repressible protein,Photosystem II reaction centre X protein containing protein, expressed |
| 25 | OD, PC, QB, RA, WF... (1Y, 1y, 2Y, 2y, 3Y...) | Os08g0119800 protein | polymer | 36 | 4061.8 | 6 | UniProt (Q6ZJ41) | Oryza sativa Japonica Group (Japanese rice) | cDNA clone:001-024-H10,full insert sequence,cDNA clone:J013109P06,cDNA clone:J013136L01,Os08g0119800 protein Photosystem II core complex proteins psbY, chloroplastic |
| 26 | PD, QC, RB, SA, XF... (1Z, 1z, 2Z, 2z, 3Z...) | Photosystem II reaction center protein Z | polymer | 62 | 6582.8 | 6 | UniProt (P0C429) | Oryza sativa Japonica Group (Japanese rice) | PSII-Z |
| 27 | AG, BG, CG, DG, YF... (2A, 2d, 3A, 3d, 1A...) | BICARBONATE ION | non-polymer | 61.0 | 6 | Chemie (BCT) PubChem (769) |
Sequence modifications
1O, 1o, 2O, 2o, 3O, 3o: 1 - 247 (UniProt: Q943W1)
| PDB | External Database | Details |
|---|---|---|
| Ser 248 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 180 |
| Total formula weight | 3104403.6 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 366.1 | |
| All* | Total formula weight | 3104769.7 |
