1ZQ1
Structure of GatDE tRNA-Dependent Amidotransferase from Pyrococcus abyssi
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Glutamyl-tRNA(Gln) amidotransferase subunit D | polymer | 438 | 49640.6 | 2 | UniProt (Q9V0T9) Pfam (PF18195) Pfam (PF00710) Pfam (PF17763) | Pyrococcus abyssi | Glu-ADT subunit D |
| 2 | C, D (C, D) | Glutamyl-tRNA(Gln) amidotransferase subunit E | polymer | 633 | 71989.5 | 2 | UniProt (Q9V0U0) Pfam (PF02934) Pfam (PF02938) Pfam (PF02637) | Pyrococcus abyssi | Glu-ADT subunit E |
| 3 | E, F (A, B) | ASPARTIC ACID | non-polymer | 133.1 | 2 | Chemie (ASP) | |||
| 4 | G, H, I, J (A, B, C, D) | water | water | 18.0 | 68 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 438 (UniProt: Q9V0T9)
| PDB | External Database | Details |
|---|---|---|
| Mse 1 | Met 1 | modified residue |
| Mse 36 | Met 36 | modified residue |
| Leu 127 | Val 127 | conflict |
| Mse 149 | Met 149 | modified residue |
| Mse 181 | Met 181 | modified residue |
| Mse 191 | Met 191 | modified residue |
| Mse 217 | Met 217 | modified residue |
| Mse 225 | Met 225 | modified residue |
| Mse 234 | Met 234 | modified residue |
| Mse 237 | Met 237 | modified residue |
| Mse 257 | Met 257 | modified residue |
| Mse 362 | Met 362 | modified residue |
| Mse 393 | Met 393 | modified residue |
| Mse 403 | Met 403 | modified residue |
| Mse 418 | Met 418 | modified residue |
| Mse 419 | Met 419 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 243260.1 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 266.2 | |
| All* | Total formula weight | 243526.4 |
