1Z5L
Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C | T-cell surface glycoprotein CD1d antigen | polymer | 285 | 32632.7 | 2 | GenBank (50333) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (house mouse) | |
2 | B, D | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | GenBank (55153801) Pfam (PF07654) UniProt (by SIFTS) (P01887) In PDB | Mus musculus (house mouse) | |
3 | E, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
4 | A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
5 | A, C | (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL | non-polymer | 605.8 | 2 | Chemie (PBS) | |||
6 | A, C | HEXADECANE | non-polymer | 226.4 | 2 | Chemie (R16) | |||
7 | water | water | 18.0 | 165 | Chemie (HOH) |
Sequence modifications
A, C: 1 - 279 (GenBank: 50333)
PDB | External Database | Details |
---|---|---|
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 88586.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 2328.2 | |
All* | Total formula weight | 91763.0 |