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1YOU

Crystal structure of the catalytic domain of MMP-13 complexed with a potent pyrimidinetrione inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Collagenase 3polymer16818909.12UniProt (P45452)
Pfam (PF00413)
Homo sapiens (human)Matrix metalloproteinase-13, MMP-13
2C, D, I, J
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E, K
(A, B)
CALCIUM IONnon-polymer40.12Chemie (CA)
4F, G, L
(A, B)
SULFATE IONnon-polymer96.13Chemie (SO4)
5H, M
(A, B)
5-(2-ETHOXYETHYL)-5-[4-(4-FLUOROPHENOXY)PHENOXY]PYRIMIDINE-2,4,6(1H,3H,5H)-TRIONEnon-polymer402.42Chemie (PFD)
6N, O
(A, B)
waterwater18.017Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight37818.2
Non-Polymers*Number of molecules11
Total formula weight1434.7
All*Total formula weight39252.9
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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