1YED
STRUCTURE OF A CATALYTIC ANTIBODY IGG2A FAB FRAGMENT (D2.4)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (L, A) | IGG1 FAB FRAGMENT (D.2.4) | polymer | 219 | 24092.9 | 2 | PIR (S16112) | Mus musculus (house mouse) | |
| 2 | C, D (H, B) | IGG1 FAB FRAGMENT (D.2.4) | polymer | 226 | 24499.6 | 2 | UniProt (P01868) Pfam (PF07654) | Mus musculus (house mouse) | |
| 3 | E, F (L, A) | 4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE | non-polymer | 360.3 | 2 | Chemie (PNB) | |||
| 4 | G, H, I, J (L, A, H, B) | water | water | 18.0 | 4 | Chemie (HOH) |
Sequence modifications
L, A: 1 - 222 (PIR: S16112)
| PDB | External Database | Details |
|---|---|---|
| Ile 2 | Val 2 | conflict |
| Ser 7 | Thr 7 | conflict |
| Thr 10 | Ser 10 | conflict |
| Ser 12 | Pro 12 | conflict |
| Thr 14 | Ser 14 | conflict |
| Ile 15 | Leu 15 | conflict |
| Gln 17 | Asp 17 | conflict |
| Pro 18 | Gln 18 | conflict |
| Lys 24 | Arg 24 | conflict |
| Leu 27 | Val 30 | conflict |
| Tyr 27 | His 31 | conflict |
| Lys 30 | Asn 35 | conflict |
| Asn 34 | Tyr 39 | conflict |
| Leu 36 | Tyr 41 | conflict |
| Arg 39 | Lys 44 | conflict |
| Arg 46 | Pro 51 | conflict |
| Leu 50 | Arg 55 | conflict |
| Lys 53 | Asn 58 | conflict |
| Leu 54 | Arg 59 | conflict |
| Glu 55 | Phe 60 | conflict |
| Thr 63 | Ser 68 | conflict |
| Ala 81 | Glu 86 | conflict |
| Tyr 87 | Phe 92 | conflict |
| Val 89 | Phe 94 | conflict |
| Phe 94 | Val 99 | conflict |
| Lys 103 | Arg 108 | conflict |
| Leu 107 | Lys 112 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 97185.1 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 720.5 | |
| All* | Total formula weight | 97905.6 |
