1YAE
Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Glutamate receptor, ionotropic kainate 2 | polymer | 312 | 35118.9 | 6 | GenBank (56280) Pfam (PF10613) Pfam (PF00060) UniProt (by SIFTS) (P42260) | Rattus norvegicus (Norway rat) | Kainate receptor, Glutamate receptor 6, GluR-6, GluR6, Excitatory amino acid receptor 4, EAA4 |
| 2 | G (G) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
| 3 | H, K, N, Q, T... (A, B, C, D, E...) | (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID | non-polymer | 311.3 | 6 | Chemie (DOQ) PubChem (17753955) PubChem (3150) PubChem (100314) PubChem (23428218) PubChem (23428220) PubChem (23428300) PubChem (24066939) PubChem (23428219) PubChem (44568340) PubChem (54601877) PubChem (57156195) PubChem (57367983) PubChem (5282253) PubChem (5311075) PubChem (71308186) PubChem (5792610) PubChem (6426712) PubChem (6442551) PubChem (6446300) PubChem (10380744) PubChem (101705185) PubChem (101762098) PubChem (101790920) PubChem (6604708) PubChem (131632567) PubChem (133124932) PubChem (162916709) PubChem (162916710) PubChem (162916711) PubChem (162916712) PubChem (162916713) PubChem (172834624) | |||
| 4 | I, J, L, M, O... (B, C, D, E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NAG) | |||
| 5 | AA, BA, W, X, Y... (E, F, A, B, C...) | water | water | 18.0 | 78 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 419 - 557 (GenBank: 56280)
A, B, C, D, E, F: 662 - 819 (GenBank: 56280)
A, B, C, D, E, F: 662 - 819 (GenBank: 56280)
| PDB | External Database | Details |
|---|---|---|
| Gly 653 | - | linker |
| Gly 654 | - | linker |
| Ser 655 | - | linker |
| Leu 656 | - | linker |
| Val 657 | - | linker |
| Pro 658 | - | linker |
| Arg 659 | - | linker |
| Gly 660 | - | linker |
| Ser 661 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 210713.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 367.3 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3858.9 | |
| All* | Total formula weight | 214939.4 |
