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1W8Y

Crystal structure of the nitrocefin acyl-DD-peptidase from Actinomadura R39.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
D-alanyl-D-alanine carboxypeptidasepolymer48950083.84UniProt (P39045)Actinomadura sp.DD-peptidase,Penicillin-binding protein,PBP
2E, F, G, H, L...
(A, B, C, D)
SULFATE IONnon-polymer96.116Chemie (SO4)
3AA, I, J, Z
(D, A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
PubChem (888)
4BA, K, P, U
(D, A, B, C)
(2R)-2-{(1R)-2-OXO-1-[(2-THIENYLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACIDnon-polymer342.44Chemie (NCF)
PubChem (156596344)
5CA, DA, EA, FA
(A, B, C, D)
waterwater18.0829Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight200335.2
Non-Polymers*Number of molecules24
Total formula weight3003.8
All*Total formula weight203339.0
*Water molecules are not included.

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PDB entries from 2026-03-25

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