1W2B
Trigger Factor ribosome binding domain in complex with 50S
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 23S RRNA | polymer | 2922 | 946034.4 | 1 | GenBank (3377779) | HALOARCULA MARISMORTUI | |
| 2 | B (1) | 50S RIBOSOMAL PROTEIN L39E | polymer | 48 | 5844.7 | 1 | UniProt (P22452) Pfam (PF00832) | HALOARCULA MARISMORTUI (ARCHAEA) | HL39E, HL46E, RIBOSOMAL PROTEIN L39E |
| 3 | C (2) | 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E | polymer | 92 | 10815.2 | 1 | UniProt (P32411) Pfam (PF00935) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 4 | D (5) | TRIGGER FACTOR | polymer | 144 | 15837.0 | 1 | GenBank (147989) Pfam (PF05697) UniProt (by SIFTS) (P0A850) | ESCHERICHIA COLI | |
| 5 | E (9) | 5S RRNA | polymer | 122 | 39318.4 | 1 | GenBank (3377779) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 6 | F (A) | 50S RIBOSOMAL PROTEIN L2P | polymer | 239 | 25237.5 | 1 | UniProt (P20276) Pfam (PF00181) Pfam (PF03947) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L2, HMAL2, HL4 |
| 7 | G (B) | 50S RIBOSOMAL PROTEIN L3P | polymer | 337 | 37265.2 | 1 | UniProt (P20279) Pfam (PF00297) | HALOARCULA MARISMORTUI (ARCHAEA) | HMAL3, HL1, RIBOSOMAL PROTEIN L3 |
| 8 | H (C) | 50S RIBOSOMAL PROTEIN L4P | polymer | 246 | 26442.1 | 1 | UniProt (P12735) Pfam (PF00573) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L4, HMAL4, HL6 |
| 9 | I (D) | 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 | polymer | 176 | 19420.5 | 1 | UniProt (P14124) Pfam (PF00281) Pfam (PF00673) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 10 | J (E) | 50S RIBOSOMAL PROTEIN L6P | polymer | 177 | 19830.5 | 1 | UniProt (P14135) Pfam (PF00347) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L6, HMAL6, HL10 |
| 11 | K (F) | 50S RIBOSOMAL PROTEIN L7AE | polymer | 119 | 12600.8 | 1 | UniProt (P12743) Pfam (PF01248) | HALOARCULA MARISMORTUI (ARCHAEA) | HS6, RIBOSOMAL PROTEIN L10 |
| 12 | L (G) | 50S RIBOSOMAL PROTEIN L10E | polymer | 348 | 37213.8 | 1 | UniProt (P15825) Pfam (PF00466) Pfam (PF17777) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L10, ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG, L10E, HMAL10 |
| 13 | M (H) | 50S RIBOSOMAL PROTEIN L10E | polymer | 167 | 18022.5 | 1 | UniProt (P60617) Pfam (PF00252) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L10E |
| 14 | N (I) | 50S RIBOSOMAL PROTEIN L13P | polymer | 145 | 16249.2 | 1 | UniProt (P29198) Pfam (PF00572) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L13, HMAL13 |
| 15 | O (J) | 50S RIBOSOMAL PROTEIN L14P | polymer | 132 | 14216.2 | 1 | UniProt (P22450) Pfam (PF00238) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L14, HMAL14, HL27 |
| 16 | P (K) | 50S RIBOSOMAL PROTEIN L15P | polymer | 164 | 17874.2 | 1 | UniProt (P12737) Pfam (PF00828) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L15, HMAL15, HL9 |
| 17 | Q (L) | 50S RIBOSOMAL PROTEIN L15E | polymer | 194 | 22856.6 | 1 | UniProt (P60618) Pfam (PF00827) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 18 | R (M) | 50S RIBOSOMAL PROTEIN L18P | polymer | 186 | 20509.7 | 1 | UniProt (P14123) Pfam (PF17144) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L18, HMAL18, HL12 |
| 19 | S (N) | 50S RIBOSOMAL PROTEIN L18E | polymer | 115 | 12307.7 | 1 | UniProt (P12733) Pfam (PF00828) | HALOARCULA MARISMORTUI (ARCHAEA) | HL29, L19, RIBOSOMAL PROTEIN L18E |
| 20 | T (O) | 50S RIBOSOMAL PROTEIN L19E | polymer | 148 | 16631.3 | 1 | UniProt (P14119) Pfam (PF01280) | HALOARCULA MARISMORTUI (ARCHAEA) | HMAL19, HL24, RIBOSOMAL PROTEIN L19E |
| 21 | U (P) | 50S RIBOSOMAL PROTEIN L21E | polymer | 95 | 10436.6 | 1 | UniProt (P12734) Pfam (PF01157) | HALOARCULA MARISMORTUI (ARCHAEA) | HL31, RIBOSOMAL PROTEIN L21E |
| 22 | V (Q) | 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 | polymer | 154 | 16835.7 | 1 | UniProt (P10970) Pfam (PF00237) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 23 | W (R) | 50S RIBOSOMAL PROTEIN L23P | polymer | 84 | 9481.3 | 1 | UniProt (P12732) Pfam (PF00276) | HALOARCULA MARISMORTUI (ARCHAEA) | HMAL23, HL25, L21, RIBOSOMAL PROTEIN L23 |
| 24 | X (S) | RIBOSOMAL PROTEIN L24 | polymer | 119 | 13539.8 | 1 | UniProt (P10972) Pfam (PF16906) Pfam (PF00467) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 25 | Y (T) | 50S RIBOSOMAL PROTEIN L24P | polymer | 66 | 7233.7 | 1 | UniProt (P14116) Pfam (PF01246) | HALOARCULA MARISMORTUI (ARCHAEA) | HMAL24, HL16, HL15, RIBOSOMAL PROTEIN L24P |
| 26 | Z (U) | 50S RIBOSOMAL PROTEIN L24E | polymer | 70 | 7758.7 | 1 | UniProt (P10971) Pfam (PF00831) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L24E, HL21/HL22 |
| 27 | AA (V) | 50S RIBOSOMAL PROTEIN L30P | polymer | 154 | 17062.9 | 1 | UniProt (P14121) Pfam (PF00327) | HALOARCULA MARISMORTUI (ARCHAEA) | HMAL30, HL20, HL16 RIBOSOMAL PROTEIN L29 |
| 28 | BA (W) | 50S RIBOSOMAL PROTEIN L31E | polymer | 91 | 10253.4 | 1 | UniProt (P18138) Pfam (PF01198) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L31E , L34, HL30 |
| 29 | CA (X) | 50S RIBOSOMAL PROTEIN L32E | polymer | 240 | 26324.5 | 1 | UniProt (P12736) Pfam (PF14520) Pfam (PF01655) | HALOARCULA MARISMORTUI (ARCHAEA) | RIBOSOMAL PROTEIN L32E, HL5 |
| 30 | DA (Y) | 50S RIBOSOMAL PROTEIN L37AE | polymer | 73 | 8097.8 | 1 | UniProt (P60619) Pfam (PF01780) | HALOARCULA MARISMORTUI (ARCHAEA) | |
| 31 | EA (Z) | RIBOSOMAL PROTEIN L37E | polymer | 56 | 6199.0 | 1 | UniProt (P32410) Pfam (PF01907) | HALOARCULA MARISMORTUI (ARCHAEA) | L35E |
| 32 | AB, AC, AG, AJ, BB... (0, X, J, 2, 9...) | MAGNESIUM ION | non-polymer | 24.3 | 117 | Chemie (MG) | |||
| 33 | OC, PC (0) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 34 | AD, AE, AH, BD, BE... (0, C, I, K, L...) | SODIUM ION | non-polymer | 23.0 | 86 | Chemie (NA) | |||
| 35 | AF, AI, DI, EI, FI... (0, B, I, J, K...) | CHLORIDE ION | non-polymer | 35.5 | 22 | Chemie (CL) | |||
| 36 | BJ, CJ, LH, OI, YI (Y, Z, 2, N, T) | CADMIUM ION | non-polymer | 112.4 | 5 | Chemie (CD) | |||
| 37 | AK, BK, CK, DJ, DK... (T, U, V, 0, W...) | water | water | 18.0 | 7887 | Chemie (HOH) |
Sequence modifications
B: 1 - 311 (UniProt: P20279)
| PDB | External Database | Details |
|---|---|---|
| Arg 310 | Phe 310 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1467751.2 | |
| Non-Polymers* | Number of molecules | 232 |
| Total formula weight | 6241.0 | |
| All* | Total formula weight | 1473992.2 |
