1VQK
The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 23S ribosomal rna | polymer | 2922 | 946090.4 | 1 | GenBank (3377779) | Haloarcula marismortui | |
| 2 | B (9) | 5S ribosomal RNA | polymer | 122 | 39318.4 | 1 | GenBank (3377779) | Haloarcula marismortui | |
| 3 | C (4) | 5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3' | polymer | 5 | 1138.9 | 1 | |||
| 4 | D (A) | 50S ribosomal protein L2P | polymer | 240 | 25354.7 | 1 | UniProt (P20276) Pfam (PF00181) Pfam (PF03947) | Haloarcula marismortui | |
| 5 | E (B) | 50S ribosomal protein L3P | polymer | 338 | 37396.4 | 1 | GenBank (55378384) Pfam (PF00297) UniProt (by SIFTS) (P20279) | Haloarcula marismortui | |
| 6 | F (C) | 50S ribosomal protein L4E | polymer | 246 | 26442.1 | 1 | UniProt (P12735) Pfam (PF00573) | Haloarcula marismortui | |
| 7 | G (D) | 50S ribosomal protein L5P | polymer | 177 | 19551.7 | 1 | UniProt (P14124) Pfam (PF00281) Pfam (PF00673) | Haloarcula marismortui | |
| 8 | H (E) | 50S ribosomal protein L6P | polymer | 178 | 19961.7 | 1 | UniProt (P14135) Pfam (PF00347) | Haloarcula marismortui | |
| 9 | I (F) | 50S ribosomal protein L7AE | polymer | 120 | 12791.9 | 1 | UniProt (P12743) Pfam (PF01248) | Haloarcula marismortui | |
| 10 | J (G) | ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG | polymer | 348 | 37213.8 | 1 | UniProt (P15825) Pfam (PF00466) Pfam (PF17777) | Haloarcula marismortui | |
| 11 | K (H) | 50S RIBOSOMAL PROTEIN L10E | polymer | 171 | 19068.6 | 1 | GenBank (50513477) Pfam (PF00252) UniProt (by SIFTS) (P60617) | Haloarcula marismortui | |
| 12 | L (J) | 50S ribosomal protein L13P | polymer | 145 | 16249.2 | 1 | UniProt (P29198) Pfam (PF00572) | Haloarcula marismortui | |
| 13 | M (K) | 50S ribosomal protein L14P | polymer | 132 | 14191.2 | 1 | UniProt (P22450) Pfam (PF00238) | Haloarcula marismortui | |
| 14 | N (L) | 50S ribosomal protein L15P | polymer | 165 | 18005.4 | 1 | UniProt (P12737) Pfam (PF00828) | Haloarcula marismortui | |
| 15 | O (M) | 50S Ribosomal Protein L15E | polymer | 195 | 22289.1 | 1 | GenBank (55231501) Pfam (PF00827) UniProt (by SIFTS) (P60618) | Haloarcula marismortui | |
| 16 | P (N) | 50S ribosomal protein L18P | polymer | 187 | 20640.9 | 1 | UniProt (P14123) Pfam (PF17144) | Haloarcula marismortui | |
| 17 | Q (O) | 50S ribosomal protein L18e | polymer | 116 | 12438.9 | 1 | UniProt (P12733) Pfam (PF00828) | Haloarcula marismortui | |
| 18 | R (P) | 50S ribosomal protein L19E | polymer | 149 | 16796.5 | 1 | UniProt (P14119) Pfam (PF01280) | Haloarcula marismortui | |
| 19 | S (Q) | 50S ribosomal protein L21e | polymer | 96 | 10567.8 | 1 | UniProt (P12734) Pfam (PF01157) | Haloarcula marismortui | |
| 20 | T (R) | 50S ribosomal protein L22P | polymer | 155 | 16966.9 | 1 | UniProt (P10970) Pfam (PF00237) | Haloarcula marismortui | |
| 21 | U (S) | 50S ribosomal protein L23P | polymer | 85 | 9612.5 | 1 | UniProt (P12732) Pfam (PF00276) | Haloarcula marismortui | |
| 22 | V (T) | 50S ribosomal protein L24P | polymer | 120 | 13671.0 | 1 | UniProt (P10972) Pfam (PF16906) Pfam (PF00467) | Haloarcula marismortui | |
| 23 | W (U) | 50S ribosomal protein L24E | polymer | 66 | 7233.7 | 1 | UniProt (P14116) Pfam (PF01246) | Haloarcula marismortui | |
| 24 | X (V) | 50S ribosomal protein L29P | polymer | 71 | 7889.9 | 1 | UniProt (P10971) Pfam (PF00831) | Haloarcula marismortui | |
| 25 | Y (W) | 50S ribosomal protein L30P | polymer | 154 | 17062.9 | 1 | UniProt (P14121) Pfam (PF00327) | Haloarcula marismortui | |
| 26 | Z (X) | 50S ribosomal protein L31e | polymer | 92 | 10384.6 | 1 | UniProt (P18138) Pfam (PF01198) | Haloarcula marismortui | |
| 27 | AA (Y) | 50S ribosomal protein L32E | polymer | 241 | 26455.7 | 1 | UniProt (P12736) Pfam (PF14520) Pfam (PF01655) | Haloarcula marismortui | |
| 28 | BA (Z) | 50S ribosomal protein L37Ae | polymer | 83 | 9409.3 | 1 | GenBank (55231162) Pfam (PF01780) UniProt (by SIFTS) (P60619) | Haloarcula marismortui | |
| 29 | CA (1) | 50S ribosomal protein L37e | polymer | 57 | 6330.2 | 1 | UniProt (P32410) Pfam (PF01907) | Haloarcula marismortui | |
| 30 | DA (2) | 50S ribosomal protein L39e | polymer | 50 | 6133.1 | 1 | UniProt (P22452) Pfam (PF00832) | Haloarcula marismortui | |
| 31 | EA (3) | 50S ribosomal protein L44E | polymer | 92 | 10815.2 | 1 | UniProt (P32411) Pfam (PF00935) | Haloarcula marismortui | |
| 32 | FA (I) | 50S RIBOSOMAL PROTEIN L11P | polymer | 162 | 17097.5 | 1 | GenBank (132647) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (P14122) | Haloarcula marismortui | |
| 33 | AB, AC, AD, BB, BC... (0, K, 9, A, B...) | MAGNESIUM ION | non-polymer | 24.3 | 93 | Chemie (MG) | |||
| 34 | PD, QD (0) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 35 | AE, AF, AG, BE, BF... (0, 3, M, 9, Q...) | SODIUM ION | non-polymer | 23.0 | 75 | Chemie (NA) | |||
| 36 | AL, BL, CL, DG, DM... (J, 0, 3, L, M...) | CHLORIDE ION | non-polymer | 35.5 | 22 | Chemie (CL) | |||
| 37 | AH, AI, AJ, AK, AM... (0, 1, 3, L, 9...) | STRONTIUM ION | non-polymer | 87.6 | 114 | Chemie (SR) | |||
| 38 | CM, JL, UL, XL, YL (3, O, U, Z, 1) | CADMIUM ION | non-polymer | 112.4 | 5 | Chemie (CD) | |||
| 39 | AN, BN, CN, DN, EN... (U, V, W, X, Y...) | water | water | 18.0 | 7668 | Chemie (HOH) |
Sequence modifications
K: 1 - 132 (UniProt: P22450)
M: 0 - 194 (GenBank: 55231501)
Z: 10 - 92 (GenBank: 55231162)
| PDB | External Database | Details |
|---|---|---|
| Leu 44 | His 44 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 13 | Lys 14 | conflict |
| Ala 194 | Gly 195 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 10 | Ser 34 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 32 |
| Total formula weight | 1474570.5 | |
| Non-Polymers* | Number of molecules | 311 |
| Total formula weight | 15393.5 | |
| All* | Total formula weight | 1489964.0 |
