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1VAQ

Crystal structure of the Mg2+-(chromomycin A3)2-d(TTGGCCAA)2 complex reveals GGCC binding specificity of the drug dimer chelated by metal ion

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3'polymer82426.64synthetic construct
2E, F, I, K
(E, F, I, K)
2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetatebranched318.44In PDB
GlyTouCan (G66610ZG)
3G, H, J, L
(G, H, J, L)
3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diolbranched432.54In PDB
GlyTouCan (G76712GN)
4M, Q
(A, D)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5N, O, P, R
(A, B, C, D)
(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulosenon-polymer420.44Chemie (CPH)
6S, T, U, V
(A, B, C, D)
waterwater18.0283Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight9706.5
BranchedNumber of molecules8
Total formula weight3003.5
Non-Polymers*Number of molecules6
Total formula weight1730.3
All*Total formula weight14440.2
*Water molecules are not included.

246333

PDB entries from 2025-12-17

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