1N36
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S RIBOSOMAL RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 2 | B (B) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (C) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D (D) | 30S RIBOSOMAL PROTEIN S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E (E) | 30S RIBOSOMAL PROTEIN S5 | polymer | 161 | 17452.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F (F) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 7 | G (G) | 30S RIBOSOMAL PROTEIN S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H (H) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 9 | I (I) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 10 | J (J) | 30S RIBOSOMAL PROTEIN S10 | polymer | 104 | 11823.8 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K (K) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L (L) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 13 | M (M) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N (N) | 30S RIBOSOMAL PROTEIN S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 15 | O (O) | 30S RIBOSOMAL PROTEIN S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P (P) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q (Q) | 30S RIBOSOMAL PROTEIN S17 | polymer | 104 | 12193.5 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 18 | R (R) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S (S) | 30S RIBOSOMAL PROTEIN S19 | polymer | 92 | 10474.3 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T (T) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 21 | U (V) | 30S RIBOSOMAL PROTEIN THX | polymer | 26 | 3218.8 | 1 | UniProt (P80380) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus | |
| 22 | V, W (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
H: 1 - 138 (UniProt: Q5SHQ2)
Q: 2 - 105 (UniProt: Q5SHP7)
| PDB | External Database | Details |
|---|---|---|
| Asp 25 | Glu 25 | conflict |
| Arg 37 | Lys 37 | conflict |
| Asp 52 | Glu 52 | conflict |
| Val 61 | Ile 61 | conflict |
| Tyr 62 | His 62 | conflict |
| His 81 | Lys 81 | conflict |
| Lys 88 | Arg 88 | conflict |
| Ser 115 | Pro 115 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Lys 50 | Arg 49 | conflict |
| Leu 53 | Val 52 | conflict |
| Ser 62 | Ala 61 | conflict |
| Ser 79 | Glu 78 | conflict |
| Met 82 | Leu 81 | conflict |
| Ile 90 | Val 89 | conflict |
| Gln 96 | Ala 95 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 782501.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 130.8 | |
| All* | Total formula weight | 782632.1 |
