1M56
Structure of cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, G | CYTOCHROME C OXIDASE | polymer | 566 | 63195.4 | 2 | UniProt (P33517) Pfam (PF00115) In PDB | Rhodobacter sphaeroides | Cytochrome c oxidase polypeptide I |
2 | B, H | CYTOCHROME C OXIDASE | polymer | 264 | 29385.4 | 2 | UniProt (Q03736) Pfam (PF02790) Pfam (PF00116) In PDB | Rhodobacter sphaeroides | Cytochrome c oxidase polypeptide II |
3 | C, I | CYTOCHROME C OXIDASE | polymer | 266 | 30197.2 | 2 | UniProt (P84153) Pfam (PF00510) In PDB | Rhodobacter sphaeroides | cytochrome-c oxidase chain III |
4 | D, J | CYTOCHROME C OXIDASE | polymer | 51 | 5409.3 | 2 | UniProt (Q8KRK5) Pfam (PF07835) In PDB | Rhodobacter sphaeroides | |
5 | H, A, B, G | COPPER (II) ION | non-polymer | 63.5 | 6 | Chemie (CU) | |||
6 | A, G | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
7 | A, G | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
8 | A, G | HEME-A | non-polymer | 852.8 | 4 | Chemie (HEA) | |||
9 | G, I, J, A, C... | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 12 | Chemie (3PE) | |||
10 | water | water | 18.0 | 436 | Chemie (HOH) |
Sequence modifications
A, G: 1 - 566 (UniProt: P33517)
C, I: 1 - 266 (UniProt: P84153)
PDB | External Database | Details |
---|---|---|
Ile 436 | Ser 436 | SEE REMARK 999 |
Tyr 437 | Thr 437 | SEE REMARK 999 |
Phe 438 | Ser 438 | SEE REMARK 999 |
Trp 439 | Gly 439 | SEE REMARK 999 |
Thr 518 | Ser 518 | SEE REMARK 999 |
Thr 520 | Ser 520 | SEE REMARK 999 |
Arg 521 | - | SEE REMARK 999 |
PDB | External Database | Details |
---|---|---|
Phe 30 | Asn 30 | SEE REMARK 999 |
Met 92 | Ile 92 | SEE REMARK 999 |
Ile 244 | Met 244 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 256374.6 | |
Non-Polymers* | Number of molecules | 26 |
Total formula weight | 12898.2 | |
All* | Total formula weight | 269272.7 |