1KQR
Crystal Structure of the Rhesus Rotavirus VP4 Sialic Acid Binding Domain in Complex with 2-O-methyl-alpha-D-N-acetyl neuraminic acid
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | VP4 | polymer | 179 | 20220.3 | 1 | UniProt (P12473) | Rhesus rotavirus | |
| 2 | B (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 3 | C (A) | 2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid | non-polymer | 323.3 | 1 | Chemie (MNA) PubChem (446069) PubChem (5067510) PubChem (6409690) PubChem (14160669) PubChem (14160670) PubChem (15108907) PubChem (15108909) PubChem (21635522) PubChem (29983255) PubChem (40489130) PubChem (44119525) PubChem (44343219) PubChem (45039746) PubChem (51777068) PubChem (51777072) PubChem (5702845) PubChem (124349183) PubChem (71299535) PubChem (71750169) PubChem (92132242) PubChem (95608246) PubChem (96327161) PubChem (96327164) PubChem (97049943) PubChem (124800623) PubChem (126968463) PubChem (129360358) PubChem (129374373) PubChem (133688711) PubChem (134067226) PubChem (174858731) | |||
| 4 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 5 | E (A) | water | water | 18.0 | 190 | Chemie (HOH) |
Sequence modifications
A: 62 - 224 (UniProt: P12473)
| PDB | External Database | Details |
|---|---|---|
| Gly 46 | - | cloning artifact |
| Ser 47 | - | cloning artifact |
| Pro 48 | - | cloning artifact |
| Glu 49 | - | cloning artifact |
| Phe 50 | - | cloning artifact |
| Pro 51 | - | cloning artifact |
| Gly 52 | - | cloning artifact |
| Arg 53 | - | cloning artifact |
| Glu 54 | - | cloning artifact |
| Asn 55 | - | cloning artifact |
| Leu 56 | - | cloning artifact |
| Tyr 57 | - | cloning artifact |
| Phe 58 | - | cloning artifact |
| Gln 59 | - | cloning artifact |
| Gly 60 | - | cloning artifact |
| Arg 61 | - | cloning artifact |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 20220.3 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 511.5 | |
| All* | Total formula weight | 20731.7 |
