1JGP
The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 30S 16S ribosomal RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 2 | B, C (B, C) | tRNA(Phe) | polymer | 76 | 24890.1 | 2 | GenBank (176479) | ||
| 3 | D (D) | tRNA(Phe) | polymer | 74 | 23728.1 | 1 | |||
| 4 | E (1) | MESSENGER RNA MV36 | polymer | 36 | 11592.0 | 1 | |||
| 5 | F (E) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 6 | G (F) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus | |
| 7 | H (G) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 8 | I (H) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 9 | J (I) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 10 | K (J) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 11 | L (K) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 12 | M (L) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 13 | N (M) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 14 | O (N) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 15 | P (O) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 16 | Q (P) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 17 | R (Q) | 30S RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 18 | S (R) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 19 | T (S) | 30S RIBOSOMAL PROTEIN S16 | polymer | 91 | 10808.4 | 1 | GenBank (12056104) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus | |
| 20 | U (T) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 21 | V (U) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | GenBank (6739549) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus | |
| 22 | W (V) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus | |
| 23 | X (W) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11722.1 | 1 | GenBank (11125386) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 24 | Y (X) | 30S RIBOSOMAL PROTEIN THX | polymer | 26 | 3218.8 | 1 | UniProt (P32193) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus |
Sequence modifications
B, C: 1 - 76 (GenBank: 176479)
| PDB | External Database | Details |
|---|---|---|
| 2mg 10 | G 10 | modified residue |
| H2u 16 | U 16 | modified residue |
| H2u 17 | U 17 | modified residue |
| M2g 26 | G 26 | modified residue |
| Omc 32 | C 32 | modified residue |
| Omg 34 | G 34 | modified residue |
| Yg 37 | G 37 | modified residue |
| Psu 39 | U 39 | modified residue |
| 5mc 40 | C 40 | modified residue |
| 7mg 46 | G 46 | modified residue |
| 5mc 49 | C 49 | modified residue |
| 5mu 54 | U 54 | modified residue |
| Psu 55 | U 55 | modified residue |
| 1ma 58 | A 58 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 25 |
| Total formula weight | 869035.6 | |
| All* | Total formula weight | 869035.6 |
