1IBL
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S RIBOSOMAL RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 2 | B (X) | P-SITE MESSENGER RNA FRAGMENT | polymer | 6 | 1790.1 | 1 | |||
| 3 | C (Y) | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA | polymer | 15 | 4815.9 | 1 | |||
| 4 | D (Z) | A-SITE MESSENGER RNA FRAGMENT | polymer | 4 | 1179.7 | 1 | |||
| 5 | E (B) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | EMBL (13446664) Pfam (PF00318) UniProt (by SIFTS) (P80371) | Thermus thermophilus | |
| 6 | F (C) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | EMBL (13446666) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus | |
| 7 | G (D) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 8 | H (E) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus | |
| 9 | I (F) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus | |
| 10 | J (G) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 11 | K (H) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 12 | L (I) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | EMBL (13446668) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus | |
| 13 | M (J) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus | |
| 14 | N (K) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | GenBank (4519421) Pfam (PF00411) UniProt (by SIFTS) (P80376) | Thermus thermophilus | |
| 15 | O (L) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus | |
| 16 | P (M) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | GenBank (4519420) Pfam (PF00416) UniProt (by SIFTS) (P80377) | Thermus thermophilus | |
| 17 | Q (N) | 30S RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 18 | R (O) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus | |
| 19 | S (P) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | GenBank (12056104) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus | |
| 20 | T (Q) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | EMBL (673503) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 21 | U (R) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | GenBank (6739549) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus | |
| 22 | V (S) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus | |
| 23 | W (T) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 1 | GenBank (11125386) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 24 | X (V) | 30S RIBOSOMAL PROTEIN THX | polymer | 26 | 3218.8 | 1 | UniProt (P32193) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus | |
| 25 | Y (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
| 26 | AA, AB, AC, AD, AE... (A, Y, D, J) | MAGNESIUM ION | non-polymer | 24.3 | 125 | Chemie (MG) | |||
| 27 | SE, VE (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
P: 1 - 88 (GenBank: 12056104)
| PDB | External Database | Details |
|---|---|---|
| - | Phe 18 | conflict |
| - | His 19 | conflict |
| - | Tyr 20 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 24 |
| Total formula weight | 791336.5 | |
| Non-Polymers* | Number of molecules | 128 |
| Total formula weight | 3784.6 | |
| All* | Total formula weight | 795121.1 |
