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1IBK

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S RIBOSOMAL RNApolymer1522493958.31GenBank (155076)Thermus thermophilus
2XP-SITE MESSENGER RNA FRAGMENTpolymer61790.11Thermus thermophilus
3B30S RIBOSOMAL PROTEIN S2polymer25629317.71EMBL (13446664)
Pfam (PF00318)
UniProt (by SIFTS) (P80371)
In PDB
Thermus thermophilus
4C30S RIBOSOMAL PROTEIN S3polymer23926751.11EMBL (13446666)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB
Thermus thermophilus
5D30S RIBOSOMAL PROTEIN S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Thermus thermophilus
6E30S RIBOSOMAL PROTEIN S5polymer16217583.41UniProt (P27152)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB
Thermus thermophilus
7F30S RIBOSOMAL PROTEIN S6polymer10111988.81UniProt (P23370)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB
Thermus thermophilus
8G30S RIBOSOMAL PROTEIN S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB
Thermus thermophilus
9H30S RIBOSOMAL PROTEIN S8polymer13815868.61UniProt (P24319)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB
Thermus thermophilus
10I30S RIBOSOMAL PROTEIN S9polymer12814429.71EMBL (13446668)
Pfam (PF00380)
UniProt (by SIFTS) (P80374)
In PDB
Thermus thermophilus
11J30S RIBOSOMAL PROTEIN S10polymer10511955.01UniProt (P80375)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB
Thermus thermophilus
12K30S RIBOSOMAL PROTEIN S11polymer12913737.91GenBank (4519421)
Pfam (PF00411)
UniProt (by SIFTS) (P80376)
In PDB
Thermus thermophilus
13L30S RIBOSOMAL PROTEIN S12polymer13514920.81UniProt (P17293)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB
Thermus thermophilus
14M30S RIBOSOMAL PROTEIN S13polymer12614338.91GenBank (4519420)
Pfam (PF00416)
UniProt (by SIFTS) (P80377)
In PDB
Thermus thermophilus
15N30S RIBOSOMAL PROTEIN S14polymer617158.71UniProt (P24320)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB
Thermus thermophilus
16O30S RIBOSOMAL PROTEIN S15polymer8910578.41UniProt (P80378)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB
Thermus thermophilus
17P30S RIBOSOMAL PROTEIN S16polymer8810410.01GenBank (12056104)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB
Thermus thermophilus
18Q30S RIBOSOMAL PROTEIN S17polymer10512324.71EMBL (673503)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB
Thermus thermophilus
19R30S RIBOSOMAL PROTEIN S18polymer8810244.31GenBank (6739549)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB
Thermus thermophilus
20S30S RIBOSOMAL PROTEIN S19polymer9310605.51UniProt (P80381)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB
Thermus thermophilus
21T30S RIBOSOMAL PROTEIN S20polymer10611736.11GenBank (11125386)
Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB
Thermus thermophilus
22V30S RIBOSOMAL PROTEIN THXpolymer263218.81UniProt (P32193)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB
Thermus thermophilus
23APAROMOMYCINnon-polymer615.61Chemie (PAR)
24A, D, LMAGNESIUM IONnon-polymer24.3113Chemie (MG)
25D, NZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
P: 1 - 88 (GenBank: 12056104)
PDBExternal DatabaseDetails
-Phe 18conflict
-His 19conflict
-Tyr 20conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains22
Total formula weight785340.9
Non-Polymers*Number of molecules116
Total formula weight3492.9
All*Total formula weight788833.8
*Water molecules are not included.

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PDB entries from 2024-03-27

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