1IBK
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S RIBOSOMAL RNA | polymer | 1522 | 493958.3 | 1 | GenBank (155076) | Thermus thermophilus | |
| 2 | B (X) | P-SITE MESSENGER RNA FRAGMENT | polymer | 6 | 1790.1 | 1 | Thermus thermophilus | ||
| 3 | C (B) | 30S RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | EMBL (13446664) Pfam (PF00318) UniProt (by SIFTS) (P80371) | Thermus thermophilus | |
| 4 | D (C) | 30S RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | EMBL (13446666) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) | Thermus thermophilus | |
| 5 | E (D) | 30S RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 6 | F (E) | 30S RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) | Thermus thermophilus | |
| 7 | G (F) | 30S RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) | Thermus thermophilus | |
| 8 | H (G) | 30S RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 9 | I (H) | 30S RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 10 | J (I) | 30S RIBOSOMAL PROTEIN S9 | polymer | 128 | 14429.7 | 1 | EMBL (13446668) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus | |
| 11 | K (J) | 30S RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) | Thermus thermophilus | |
| 12 | L (K) | 30S RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | GenBank (4519421) Pfam (PF00411) UniProt (by SIFTS) (P80376) | Thermus thermophilus | |
| 13 | M (L) | 30S RIBOSOMAL PROTEIN S12 | polymer | 135 | 14920.8 | 1 | UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus | |
| 14 | N (M) | 30S RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | GenBank (4519420) Pfam (PF00416) UniProt (by SIFTS) (P80377) | Thermus thermophilus | |
| 15 | O (N) | 30S RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 16 | P (O) | 30S RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) | Thermus thermophilus | |
| 17 | Q (P) | 30S RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | GenBank (12056104) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) | Thermus thermophilus | |
| 18 | R (Q) | 30S RIBOSOMAL PROTEIN S17 | polymer | 105 | 12324.7 | 1 | EMBL (673503) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 19 | S (R) | 30S RIBOSOMAL PROTEIN S18 | polymer | 88 | 10244.3 | 1 | GenBank (6739549) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus | |
| 20 | T (S) | 30S RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) | Thermus thermophilus | |
| 21 | U (T) | 30S RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 1 | GenBank (11125386) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 22 | V (V) | 30S RIBOSOMAL PROTEIN THX | polymer | 26 | 3218.8 | 1 | UniProt (P32193) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) | Thermus thermophilus | |
| 23 | W (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) PubChem (165580) PubChem (6602492) PubChem (6713982) PubChem (9961808) PubChem (16757804) PubChem (16760604) PubChem (17757254) PubChem (20849281) PubChem (71191297) PubChem (23789070) PubChem (24096964) PubChem (24867526) PubChem (24867858) PubChem (25104843) PubChem (44120093) PubChem (44251565) PubChem (71188564) PubChem (44186758) PubChem (44663324) PubChem (45358711) PubChem (50989619) PubChem (66932615) PubChem (68032118) PubChem (4689) PubChem (14951) PubChem (24176) PubChem (70878598) PubChem (71751432) PubChem (73707499) PubChem (3040200) PubChem (91867972) PubChem (91972181) PubChem (94469268) PubChem (98048759) PubChem (98048761) PubChem (53486370) PubChem (5702262) PubChem (121292209) PubChem (6603975) PubChem (6604293) PubChem (122537356) PubChem (6710686) PubChem (124226135) PubChem (124464537) PubChem (9809147) PubChem (125040357) PubChem (125040359) PubChem (125121197) PubChem (129009945) PubChem (131841783) PubChem (132275078) PubChem (12313981) PubChem (58160567) PubChem (152952600) PubChem (162873319) PubChem (59361026) PubChem (59800245) PubChem (70793652) PubChem (70793824) PubChem (70795918) PubChem (71068776) PubChem (71072581) PubChem (71072592) PubChem (91151908) PubChem (94469269) PubChem (94469270) PubChem (94469271) PubChem (98048758) PubChem (98048760) PubChem (101739930) PubChem (118213779) PubChem (118705495) PubChem (122691713) PubChem (124226132) PubChem (124226133) PubChem (124226134) PubChem (124464538) PubChem (124761786) PubChem (124761787) PubChem (124761788) PubChem (124761789) PubChem (125040358) PubChem (125040360) PubChem (125121198) PubChem (129014632) PubChem (129014634) PubChem (129014635) PubChem (129313238) PubChem (134771120) PubChem (137404838) PubChem (161153506) PubChem (163199098) PubChem (164850471) PubChem (172091638) PubChem (173719997) | |||
| 24 | AA, AB, AC, AD, AE... (A, D, L) | MAGNESIUM ION | non-polymer | 24.3 | 113 | Chemie (MG) PubChem (888) | |||
| 25 | FE, HE (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
P: 1 - 88 (GenBank: 12056104)
| PDB | External Database | Details |
|---|---|---|
| - | Phe 18 | conflict |
| - | His 19 | conflict |
| - | Tyr 20 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 22 |
| Total formula weight | 785340.9 | |
| Non-Polymers* | Number of molecules | 116 |
| Total formula weight | 3492.9 | |
| All* | Total formula weight | 788833.8 |
