1DOG
REFINED STRUCTURE FOR THE COMPLEX OF 1-DEOXYNOJIRIMYCIN WITH GLUCOAMYLASE FROM (ASPERGILLUS AWAMORI) VAR. X100 TO 2.4 ANGSTROMS RESOLUTION
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | GLUCOAMYLASE-471 | polymer | 470 | 50450.7 | 1 | UniProt (P23176) Pfam (PF00723) UniProt (by SIFTS) (P69327) | Aspergillus awamori | |
| 2 | B (B) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
| 3 | C (C) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G83582BK) | |||
| 4 | D, E, F, G, H... (A) | alpha-D-mannopyranose | non-polymer | 180.2 | 10 | Chemie (MAN) | |||
| 5 | N, O (A) | 1-DEOXYNOJIRIMYCIN | non-polymer | 163.2 | 2 | Chemie (NOJ) | |||
| 6 | P (A) | water | water | 18.0 | 605 | Chemie (HOH) |
Sequence modifications
A: 1 - 471 (UniProt: P23176)
| PDB | External Database | Details |
|---|---|---|
| Leu 58 | Ile 82 | conflict |
| Ile 60 | Leu 84 | conflict |
| Thr 117 | Ala 140 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 50450.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 2308.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2127.9 | |
| All* | Total formula weight | 54886.7 |
