1DOG
REFINED STRUCTURE FOR THE COMPLEX OF 1-DEOXYNOJIRIMYCIN WITH GLUCOAMYLASE FROM (ASPERGILLUS AWAMORI) VAR. X100 TO 2.4 ANGSTROMS RESOLUTION
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | GLUCOAMYLASE-471 | polymer | 470 | 50450.7 | 1 | UniProt (P23176) UniProt (by SIFTS) (P69327) | Aspergillus awamori | |
| 2 | B (B) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
| 3 | C (C) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G83582BK) | |||
| 4 | D, E, F, G, H... (A) | alpha-D-mannopyranose | non-polymer | 180.2 | 10 | Chemie (MAN) | |||
| 5 | N, O (A) | 1-DEOXYNOJIRIMYCIN | non-polymer | 163.2 | 2 | Chemie (NOJ) PubChem (1374) PubChem (29435) PubChem (44387838) PubChem (72258) PubChem (46780624) PubChem (46783361) PubChem (58195791) PubChem (58241649) PubChem (58622819) PubChem (59892309) PubChem (59928089) PubChem (68012331) PubChem (68197421) PubChem (68197422) PubChem (68226300) PubChem (70254323) PubChem (452001) PubChem (89057096) PubChem (89288875) PubChem (90298233) PubChem (90298234) PubChem (176077) PubChem (5387598) PubChem (6603829) PubChem (6604844) PubChem (117948891) PubChem (118458168) PubChem (13018786) PubChem (10329607) PubChem (10352016) PubChem (10702150) PubChem (10888248) PubChem (11094965) PubChem (11105683) PubChem (11240664) PubChem (11957613) PubChem (13018788) PubChem (173365510) PubChem (173729950) PubChem (130756880) PubChem (131019201) PubChem (132769969) PubChem (133673282) PubChem (134694855) PubChem (159481540) PubChem (168093369) PubChem (173809871) PubChem (174403809) PubChem (175474820) | |||
| 6 | P (A) | water | water | 18.0 | 605 | Chemie (HOH) |
Sequence modifications
A: 1 - 471 (UniProt: P23176)
| PDB | External Database | Details |
|---|---|---|
| Leu 58 | Ile 82 | conflict |
| Ile 60 | Leu 84 | conflict |
| Thr 117 | Ala 140 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 50450.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 2308.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2127.9 | |
| All* | Total formula weight | 54886.7 |
