1BBD
THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (L) | IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) | polymer | 220 | 24417.0 | 1 | GenBank (208622) Pfam (PF07686) Pfam (PF07654) UniProt (by SIFTS) (Q52L64) | Mus musculus (house mouse) | |
| 2 | B (H) | IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) | polymer | 218 | 23588.2 | 1 | GenBank (2072133) | Mus musculus (house mouse) | |
| 3 | C (H) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 4 | D (H) | water | water | 18.0 | 5 | Chemie (HOH) |
Sequence modifications
L: 1 - 220 (GenBank: 208622)
H: 1 - 218 (GenBank: 2072133)
| PDB | External Database | Details |
|---|---|---|
| Thr 12 | Ser 13 | conflict |
| Thr 14 | Ser 15 | conflict |
| Thr 15 | Ala 16 | conflict |
| Lys 18 | Arg 19 | conflict |
| Thr 22 | Ser 23 | conflict |
| Arg 33 | Gly 34 | conflict |
| Thr 34 | Asn 35 | conflict |
| Tyr 38 | Phe 39 | conflict |
| Thr 40 | Ala 41 | conflict |
| Ser 49 | Pro 50 | conflict |
| Trp 56 | Gly 57 | conflict |
| Ser 80 | Thr 81 | conflict |
| Gly 83 | Ser 84 | conflict |
| Asn 97 | Asp 98 | conflict |
| Tyr 98 | His 99 | conflict |
| Asn 99 | Ser 100 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 13 | Lys 13 | conflict |
| Ala 16 | Thr 16 | conflict |
| Thr 24 | Ala 24 | conflict |
| Ile 32 | Thr 32 | conflict |
| His 35 | Tyr 35 | conflict |
| Leu 51 | Ile 51 | conflict |
| Tyr 57 | Asn 57 | conflict |
| Lys 59 | Glu 59 | conflict |
| Tyr 60 | Phe 60 | conflict |
| Lys 63 | Arg 63 | conflict |
| Gln 65 | Leu 65 | conflict |
| Val 72 | Ala 72 | conflict |
| His 82 | Gln 82 | conflict |
| Leu 83 | Val 83 | conflict |
| Asp 97 | - | insertion |
| Gly 98 | - | insertion |
| Tyr 99 | - | insertion |
| Tyr 100 | - | insertion |
| Ser 101 | - | insertion |
| Tyr 102 | His 97 | conflict |
| Tyr 103 | Leu 98 | conflict |
| Asp 104 | His 99 | conflict |
| Met 105 | Gly 100 | conflict |
| Asp 106 | Pro 101 | conflict |
| Pro 110 | Gln 105 | conflict |
| Ser 113 | Leu 108 | conflict |
| Ser 118 | Ala 113 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 48005.2 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 96.1 | |
| All* | Total formula weight | 48101.2 |
