1AFV
HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN | polymer | 151 | 16716.2 | 2 | UniProt (P12497) | Human immunodeficiency virus 1 | HIV-1 CA, HIV CA, HIV P24, P24 |
| 2 | C, E (L, M) | ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) | polymer | 217 | 23741.3 | 2 | GenBank (600718) | Mus musculus (house mouse) | FAB, FAB LIGHT CHAIN, FAB HEAVY CHAIN |
| 3 | D, F (H, K) | ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) | polymer | 220 | 23701.4 | 2 | UniProt (Q99LC4) Pfam (PF07686) Pfam (PF07654) | Mus musculus (house mouse) | FAB, FAB LIGHT CHAIN, FAB HEAVY CHAIN |
| 4 | G, H (L, M) | LEAD (II) ION | non-polymer | 207.2 | 2 | Chemie (PB) |
Sequence modifications
L, M: 3 - 217 (GenBank: 600718)
H, K: 1 - 219 (UniProt: Q99LC4)
| PDB | External Database | Details |
|---|---|---|
| Leu 4 | Met 4 | conflict |
| Arg 18 | Ser 18 | conflict |
| Ala 19 | Val 19 | conflict |
| Asp 30 | Glu 30 | conflict |
| Asn 31 | Tyr 31 | conflict |
| Ile 34 | Thr 34 | conflict |
| Phe 36 | Leu 36 | conflict |
| Asn 38 | Gln 38 | conflict |
| Phe 40 | Tyr 40 | conflict |
| Ala 54 | Gly 54 | conflict |
| Leu 58 | Val 58 | conflict |
| Gly 59 | Glu 59 | conflict |
| Met 82 | Val 82 | conflict |
| Glu 85 | Asp 85 | conflict |
| Thr 87 | Ile 87 | conflict |
| Met 89 | Ile 89 | conflict |
| Lys 96 | Arg 96 | conflict |
| Glu 97 | Lys 97 | conflict |
| Leu 100 | Ala 100 | conflict |
| Ala 104 | Ser 104 | conflict |
| Val 108 | Leu 108 | conflict |
| Leu 110 | Ile 110 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gln 1 | Glu 22 | conflict |
| Gln 3 | Lys 24 | conflict |
| Gln 5 | His 26 | conflict |
| Gln 6 | Glu 27 | conflict |
| Pro 7 | Ser 28 | conflict |
| Ser 9 | Pro 30 | conflict |
| Val 10 | Gly 31 | conflict |
| Ala 16 | Thr 37 | conflict |
| Leu 20 | Ile 41 | conflict |
| Ser 31 | Asn 52 | conflict |
| Ser 32 | Tyr 53 | conflict |
| Ile 34 | Leu 55 | conflict |
| His 35 | Gly 56 | conflict |
| Ala 37 | Val 58 | conflict |
| Gln 43 | His 64 | conflict |
| Glu 50 | Asp 71 | conflict |
| His 52 | Tyr 73 | conflict |
| Asn 54 | Gly 75 | conflict |
| Ser 55 | Gly 76 | conflict |
| Asn 57 | Tyr 78 | conflict |
| Val 72 | Ala 93 | conflict |
| Val 81 | Met 102 | conflict |
| Asp 82 | Gln 103 | conflict |
| Tyr 95 | Phe 116 | conflict |
| Trp 99 | Phe 120 | conflict |
| Arg 100 | Tyr 121 | conflict |
| Pro 104 | Ser 125 | conflict |
| - | Trp 127 | deletion |
| Tyr 109 | Val 131 | conflict |
| Leu 116 | Val 138 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 128317.7 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 414.4 | |
| All* | Total formula weight | 128732.1 |
