11YO
Single-conformation model re-refinement of 2F/S3-rich PSII intermediate structure at 2.09 Angstrom resolution
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, U (A, a) | Photosystem II protein D1 1 | polymer | 344 | 38265.6 | 2 | UniProt (P0A444) Pfam (PF00124) | Thermosynechococcus vestitus BP-1 | PSII D1 protein 1,Photosystem II Q(B) protein 1 |
| 2 | B, V (B, b) | Photosystem II CP47 reaction center protein | polymer | 510 | 56656.5 | 2 | UniProt (Q8DIQ1) Pfam (PF00421) | Thermosynechococcus vestitus BP-1 | PSII 47 kDa protein,Protein CP-47 |
| 3 | C, W (C, c) | Photosystem II CP43 reaction center protein | polymer | 461 | 50287.5 | 2 | UniProt (Q8DIF8) Pfam (PF00421) | Thermosynechococcus vestitus BP-1 | PSII 43 kDa protein,Protein CP-43 |
| 4 | D, X (D, d) | Photosystem II D2 protein | polymer | 352 | 39388.2 | 2 | UniProt (Q8CM25) Pfam (PF00124) | Thermosynechococcus vestitus BP-1 | PSII D2 protein,Photosystem II Q(A) protein |
| 5 | E, Y (E, e) | Cytochrome b559 subunit alpha | polymer | 84 | 9580.8 | 2 | UniProt (Q8DIP0) Pfam (PF00283) Pfam (PF00284) | Thermosynechococcus vestitus BP-1 | PSII reaction center subunit V |
| 6 | F, Z (F, f) | Cytochrome b559 subunit beta | polymer | 45 | 5067.9 | 2 | UniProt (Q8DIN9) Pfam (PF00283) | Thermosynechococcus vestitus BP-1 | PSII reaction center subunit VI |
| 7 | AA, G (H, h) | Photosystem II reaction center protein H | polymer | 66 | 7358.8 | 2 | UniProt (Q8DJ43) Pfam (PF00737) | Thermosynechococcus vestitus BP-1 | PSII-H |
| 8 | BA, H (I, i) | Photosystem II reaction center protein I | polymer | 38 | 4438.3 | 2 | UniProt (Q8DJZ6) Pfam (PF02532) | Thermosynechococcus vestitus BP-1 | PSII-I,PSII 4.4 kDa protein |
| 9 | CA, I (J, j) | Photosystem II reaction center protein J | polymer | 40 | 4105.9 | 2 | UniProt (P59087) Pfam (PF01788) | Thermosynechococcus vestitus BP-1 | PSII-J |
| 10 | DA, J (K, k) | Photosystem II reaction center protein K | polymer | 46 | 5028.1 | 2 | UniProt (Q9F1K9) Pfam (PF02533) | Thermosynechococcus vestitus BP-1 | PSII-K |
| 11 | EA, K (L, l) | Photosystem II reaction center protein L | polymer | 37 | 4299.0 | 2 | UniProt (Q8DIN8) Pfam (PF02419) | Thermosynechococcus vestitus BP-1 | PSII-L |
| 12 | FA, L (M, m) | Photosystem II reaction center protein M | polymer | 36 | 4009.7 | 2 | UniProt (Q8DHA7) Pfam (PF05151) | Thermosynechococcus vestitus BP-1 | PSII-M |
| 13 | GA, M (O, o) | Photosystem II manganese-stabilizing polypeptide | polymer | 272 | 29637.4 | 2 | UniProt (P0A431) Pfam (PF01716) | Thermosynechococcus vestitus BP-1 | MSP |
| 14 | HA, N (R, r) | Photosystem II protein Y | polymer | 41 | 4590.6 | 2 | UniProt (Q8DKM3) Pfam (PF06298) | Thermosynechococcus vestitus BP-1 | |
| 15 | IA, O (T, t) | Photosystem II reaction center protein T | polymer | 32 | 3906.7 | 2 | UniProt (Q8DIQ0) Pfam (PF01405) | Thermosynechococcus vestitus BP-1 | PSII-T,PSII-Tc |
| 16 | JA, P (U, u) | Photosystem II 12 kDa extrinsic protein | polymer | 134 | 15031.0 | 2 | UniProt (Q9F1L5) Pfam (PF06514) | Thermosynechococcus vestitus BP-1 | PS II complex 12 kDa extrinsic protein,PSII-U |
| 17 | KA, Q (V, v) | Cytochrome c-550 | polymer | 163 | 18046.9 | 2 | UniProt (P0A386) Pfam (PF14495) | Thermosynechococcus vestitus BP-1 | Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c |
| 18 | LA, R (X, x) | Photosystem II reaction center X protein | polymer | 41 | 4322.2 | 2 | UniProt (Q9F1R6) Pfam (PF06596) | Thermosynechococcus vestitus BP-1 | |
| 19 | MA, S (Y, y) | Photosystem II reaction center protein Ycf12 | polymer | 46 | 5039.1 | 2 | UniProt (Q8DJI1) Pfam (PF05969) | Thermosynechococcus vestitus BP-1 | |
| 20 | NA, T (Z, z) | Photosystem II reaction center protein Z | polymer | 62 | 6766.2 | 2 | UniProt (Q8DHJ2) Pfam (PF01737) | Thermosynechococcus vestitus BP-1 | PSII-Z |
| 21 | HE, OA (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 22 | AG, BC, BD, BF, BG... (c, B, D, b, C...) | CHLOROPHYLL A | non-polymer | 893.5 | 70 | Chemie (CLA) | |||
| 23 | AH, BE, CC, ED, FE... (d, T, C, D, Y...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) PubChem (5280489) PubChem (86765360) PubChem (173398668) | |||
| 24 | NE, OE, TA, UA (a, A) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 25 | BH, FD, QE, VA (d, D, a, A) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
| 26 | IH, JD, QH, SE, UE... (f, D, l, a, A...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) | |||
| 27 | LH, PG, QG, RG, SC... (h, c, C, H, A) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 9 | Chemie (DGD) PubChem (15991538) | |||
| 28 | AC, AE, AF, BB, CE... (B, M, b, T, X...) | STEARIC ACID | non-polymer | 284.5 | 38 | Chemie (STE) PubChem (5281) | |||
| 29 | AB, ZE (A, a) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 30 | FH, ID, MD, RC, SG... (d, D, C, c, b...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 13 | Chemie (LMG) PubChem (446441) | |||
| 31 | DH, EH, KD, LD, ND... (d, D, E, a, l...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 10 | Chemie (LHG) | |||
| 32 | AD, PE (D, a) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 33 | CH, GD, HD, KE (d, D, a) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 34 | DE, HH, QD, WH (V, f, F, v) | HEME C | non-polymer | 618.5 | 4 | Chemie (HEC) | |||
| 35 | AI, AJ, BI, BJ, CI... (C, k, D, l, E...) | water | water | 18.0 | 1994 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 631653.0 | |
| Non-Polymers* | Number of molecules | 192 |
| Total formula weight | 127543.7 | |
| All* | Total formula weight | 759196.8 |
