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Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)
DNApolymer329706.31Escherichia coli
2B
(K)
DNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)
Escherichia coliRNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
3C
(R)
RNA (5'-R(P*GP*AP*UP*GP*UP*GP*UP*GP*CP*U)-3')polymer196047.61Escherichia coli
4D
(A)
DNA (5'-D(*CP*GP*TP*CP*CP*TP*TP*TP*CP*GP*GP*AP*AP*GP*AP*GP*AP*TP*TP*CP*AP*GP*A)-3')polymer329881.41Escherichia coli
5E, F
(G, H)
DNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
6G
(I)
DNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V2)
Pfam (PF04560)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
7H
(J)
DNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T7)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Escherichia coliRNAP subunit beta', RNA polymerase subunit beta', Transcriptase subunit beta'
8I
(I)
CHAPSOnon-polymer631.91Chemie (1N7)
PubChem (90479263)
9J
(J)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
10K, L
(J)
ZINC IONnon-polymer65.42Chemie (ZN)
PubChem (32051)
11M, N, O, P, Q...
(B, K, R, A, G...)
waterwater18.0674Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight415189.8
Non-Polymers*Number of molecules4
Total formula weight787.0
All*Total formula weight415976.8
*Water molecules are not included.

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PDB entries from 2026-06-10

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