English
日本語
简体中文
繁體中文
한국어
✖
Menu
RCSB PDB
PDBe
BMRB
Adv. Search
Search help
Summary
Structural details
Experimental details
Functional details
Sequence Neighbor
History
Downloads
5NDW
Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
This is a
non-PDB format compatible
entry.
Chains
Entity
Asym IDs
Number of Exact matches
1
A
E
201
2
B
F
177
3
C
G
251
4
D
H
280
5
I
J
141
6
K
L
210
7
M
N
148
8
O
P
258
9
Q
R
79
10
S
T
184
11
U
V
249
12
W
X
180
13
Y
Z
235
14
AA
BA
222
15
CA
DA
202
16
EA
FA
203
17
GA
HA
244
18
IA
JA
257
19
KA
LA
253
20
MA
NA
208
21
OA
PA
153
22
QA
RA
247
23
SA
TA
233
24
UA
VA
201
25
WA
XA
212
26
YA
ZA
167
27
AB
BB
254
28
CB
DB
274
29
EB
FB
277
30
GB
HB
247
31
IB
JB
218
32
KB
LB
274
33
MB
NB
269
34
OB
PB
273
35
QB
RB
216
36
SB
TB
194
37
UB
VB
273
38
WB
XB
277
39
YB
ZB
277
40
AC
BC
272
41
CC
DC
278
42
EC
FC
279
43
GC
HC
266
44
IC
JC
274
45
KC
LC
259
46
MC
NC
260
47
OC
PC
276
48
QC
RC
219
49
SC
TC
269
50
UC
VC
279
51
WC
XC
262
52
YC
ZC
253
53
AD
BD
231
54
CD
DD
267
55
ED
FD
268
56
GD
HD
279
57
ID
JD
275
58
KD
LD
236
59
MD
ND
278
60
OD
PD
270
61
QD
RD
277
62
SD
TD
261
63
UD
VD
253
64
WD
XD
221
65
YD
ZD
242
66
AE
BE
237
67
CE
DE
252
68
EE
FE
201
69
GE
HE
242
70
IE
JE
210
71
KE
LE
202
72
ME
NE
252
73
OE
PE
249
74
QE
RE
250
75
SE
TE
251
76
UE
VE
238
77
WE
XE
257
78
YE
ZE
64
79
AF
BF
194
Click on a chain to show homologues chains within the PDB.
Click on an exact match to show the superposition between a chain and a match.
Home
Top Page
Statistics
Help
FAQ
Contact Us
Cite Us / Terms and Conditions
Links
Settings
Data deposition (OneDep)
Help
Deposition to PDB, EMDB or BMRB
Download
Download PDB archive / snapshot archive
Standard format
PDBx/mmCIF Resources
Format Conversion
PDBx/mmCIF editor
Quick links
Help
non-PDB format compatible
Group Depositions
Chemical Component entries
Latest entries
Search services
Help
Search PDB (PDBj Mine)
Search PDBj RDB
Chemie search
Search BMRB
Sequence-Navigator
DASH
EM Navigator
Omokage search
SeSAW
wwPDB/RDF
RDF Portal
Status search
Molecular Viewers
Help
jV: Graphic Viewer
Molmil: WebGL Mol. Viewer
Services & Softwares
Help
Yorodumi
ASH
MAFFTash
NMRToolBox
gmfit
CRNPRED
Spanner
SFAS
HOMCOS
Derived databases
Help
eF-site
eF-seek
eF-surf
ProMode Elastic
Educational service
Help
eProtS
Molecule of the Month
Games
Papermodels
About PDBj
Help
Newsletters / Public Relations Resources
PDBj Members
PDBj Advisory Committee
Privacy Policy
253795
PDB entries from 2026-05-20