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8BQY
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BU of 8bqy by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-11-22
Release date:2023-02-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
8BV6
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BU of 8bv6 by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-12-01
Release date:2023-02-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
3GAR
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BU of 3gar by Molmil
A PH-DEPENDENT STABLIZATION OF AN ACTIVE SITE LOOP OBSERVED FROM LOW AND HIGH PH CRYSTAL STRUCTURES OF MUTANT MONOMERIC GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE, PHOSPHATE ION
Authors:Su, Y, Yamashita, M.M, Greasley, S.E, Mullen, C.A, Shim, J.H, Jennings, P.A, Benkovic, S.J, Wilson, I.A.
Deposit date:1998-05-13
Release date:1998-08-12
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 A.
J.Mol.Biol., 281, 1998
6D1V
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BU of 6d1v by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer bound to RNA
Descriptor: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
Authors:Gao, A, Serganov, A.
Deposit date:2018-04-12
Release date:2018-05-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6D1Q
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BU of 6d1q by Molmil
Crystal structure of E. coli RppH-DapF complex, monomer
Descriptor: CHLORIDE ION, Diaminopimelate epimerase, GLYCEROL, ...
Authors:Gao, A, Serganov, A.
Deposit date:2018-04-12
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
6D13
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BU of 6d13 by Molmil
Crystal structure of E.coli RppH-DapF complex
Descriptor: CHLORIDE ION, Diaminopimelate epimerase, IODIDE ION, ...
Authors:Gao, A, Serganov, A.
Deposit date:2018-04-11
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural and kinetic insights into stimulation of RppH-dependent RNA degradation by the metabolic enzyme DapF.
Nucleic Acids Res., 46, 2018
3DB2
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BU of 3db2 by Molmil
Crystal structure of a putative nadph-dependent oxidoreductase (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 A resolution
Descriptor: GLYCEROL, putative NADPH-dependent oxidoreductase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2008-05-30
Release date:2008-06-24
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of putative NADPH-dependent oxidoreductase (ZP_01370612.1) from DESULFITOBACTERIUM HAFNIENSE DCB-2 at 1.70 A resolution
To be published
6EFV
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BU of 6efv by Molmil
The NADPH-dependent sulfite reductase flavoprotein adopts an extended conformation that is unique to this diflavin reductase
Descriptor: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tavolieri, A.M, Askenasy, I, Murray, D.T, Pennington, J.M, Stroupe, M.E.
Deposit date:2018-08-17
Release date:2019-02-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.341 Å)
Cite:NADPH-dependent sulfite reductase flavoprotein adopts an extended conformation unique to this diflavin reductase.
J. Struct. Biol., 205, 2019
1VJ1
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BU of 1vj1 by Molmil
Crystal structure of putative NADPH-dependent oxidoreductase from Mus musculus at 2.10 A resolution
Descriptor: putative NADPH-dependent oxidoreductase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2003-12-03
Release date:2003-12-09
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution
Proteins, 56, 2004
2GAR
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BU of 2gar by Molmil
A PH-DEPENDENT STABLIZATION OF AN ACTIVE SITE LOOP OBSERVED FROM LOW AND HIGH PH CRYSTAL STRUCTURES OF MUTANT MONOMERIC GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE, PHOSPHATE ION
Authors:Su, Y, Yamashita, M.M, Greasley, S.E, Mullen, C.A, Shim, J.H, Jennings, P.A, Benkovic, S.J, Wilson, I.A.
Deposit date:1998-05-13
Release date:1998-08-12
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A pH-dependent stabilization of an active site loop observed from low and high pH crystal structures of mutant monomeric glycinamide ribonucleotide transformylase at 1.8 to 1.9 A.
J.Mol.Biol., 281, 1998
3P19
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BU of 3p19 by Molmil
Improved NADPH-dependent Blue Fluorescent Protein
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Putative blue fluorescent protein
Authors:Kao, T.H, Chen, Y, Pai, C.H, Wang, A.H.J.
Deposit date:2010-09-30
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a NADPH-dependent blue fluorescent protein revealed the unique role of Gly176 on the fluorescence enhancement.
J.Struct.Biol., 174, 2011
1HV1
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BU of 1hv1 by Molmil
DISSECTING ELECTROSTATIC INTERACTIONS AND THE PH-DEPENDENT ACTIVITY OF A FAMILY 11 GLYCOSIDASE
Descriptor: ENDO-1,4-BETA-XYLANASE
Authors:Joshi, M.D, Sidhu, G, Nielsen, J.E, Brayer, G.D, Withers, S.G, McIntosh, L.P.
Deposit date:2001-01-05
Release date:2001-09-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase.
Biochemistry, 40, 2001
3A5A
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BU of 3a5a by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH5.6 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-05
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A5B
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BU of 3a5b by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-05
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A5G
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BU of 3a5g by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)
Descriptor: CARBON MONOXIDE, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-08-06
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
3A9M
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BU of 3a9m by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH9.0 coordinates)
Descriptor: CARBON MONOXIDE, Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2009-10-30
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
8VLQ
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BU of 8vlq by Molmil
Structure of PmHMGR bound to mevalonate, CoA and NAD 5 minutes after reaction initiation at pH 9
Descriptor: (R)-MEVALONATE, (R)-mevaldehyde, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
Authors:Purohit, V, Steussy, C.N, Stauffacher, C.V.
Deposit date:2024-01-12
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:pH-dependent reaction triggering in PmHMGR crystals for time-resolved crystallography.
Biophys.J., 123, 2024
2ZWJ
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BU of 2zwj by Molmil
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH4.6 coordinates)
Descriptor: Hemoglobin V, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kuwada, T, Hasegawa, T, Takagi, T, Shishikura, F.
Deposit date:2008-12-13
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
Acta Crystallogr.,Sect.D, 66, 2010
1HV0
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BU of 1hv0 by Molmil
DISSECTING ELECTROSTATIC INTERACTIONS AND THE PH-DEPENDENT ACTIVITY OF A FAMILY 11 GLYCOSIDASE
Descriptor: ENDO-1,4-BETA-XYLANASE
Authors:Joshi, M.D, Sidhu, G, Nielsen, J.E, Brayer, G.D, Withers, S.G, McIntosh, L.P.
Deposit date:2001-01-05
Release date:2001-09-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase.
Biochemistry, 40, 2001
8WKO
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BU of 8wko by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the closed form
Descriptor: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE, ...
Authors:Oda, K, Matoba, Y.
Deposit date:2023-09-28
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
8WKR
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BU of 8wkr by Molmil
Crystal structure of O-acetylhomoserine sulfhydrylase from Lactobacillus plantarum in the open form
Descriptor: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid, L-methionine gamma-lyase, PROLINE
Authors:Oda, K, Matoba, Y.
Deposit date:2023-09-28
Release date:2024-02-14
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:pH-dependent regulation of an acidophilic O -acetylhomoserine sulfhydrylase from Lactobacillus plantarum.
Appl.Environ.Microbiol., 90, 2024
8GDN
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BU of 8gdn by Molmil
Structure of PmHMGR bound to mevalonate, CoA and NAD.
Descriptor: (R)-MEVALONATE, 3-hydroxy-3-methylglutaryl-coenzyme A reductase, COENZYME A, ...
Authors:Purohit, V, Steussy, C.N, Stauffacher, C.V.
Deposit date:2023-03-06
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:pH-dependent reaction triggering in PmHMGR crystals for time-resolved crystallography.
Biophys.J., 123, 2024
1X2W
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BU of 1x2w by Molmil
Crystal Structure of Apo-Habu IX-bp at pH 4.6
Descriptor: CHLORIDE ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ...
Authors:Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
1X2T
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BU of 1x2t by Molmil
Crystal Structure of Habu IX-bp at pH 6.5
Descriptor: CALCIUM ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ...
Authors:Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H.
Deposit date:2005-04-26
Release date:2005-10-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein
J.Mol.Biol., 353, 2005
2WHD
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BU of 2whd by Molmil
Barley NADPH-dependent thioredoxin reductase 2
Descriptor: CITRATE ANION, FLAVIN-ADENINE DINUCLEOTIDE, THIOREDOXIN REDUCTASE
Authors:Kirkensgaard, K.G, Hagglund, P, Finnie, C, Svensson, B, Henriksen, A.
Deposit date:2009-05-04
Release date:2009-09-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Hordeum Vulgare Nadph-Dependent Thioredoxin Reductase 2. Unwinding the Reaction Mechanism.
Acta Crystallogr.,Sect.D, 65, 2009

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