1DL6
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SOLUTION STRUCTURE OF HUMAN TFIIB N-TERMINAL DOMAIN
Descriptor:TRANSCRIPTION FACTOR II B (TFIIB), ZINC ION
Authors:Chen, H.-T., Legault, P., Glushka, J., Omichinski, J.G., Scott, R.A.
Deposit date:1999-12-08
Release date:2000-10-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription.
Protein Sci., 9, 2000
1PFT
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N-TERMINAL DOMAIN OF TFIIB, NMR
Descriptor:TFIIB, ZINC ION
Authors:Zhu, W., Zeng, Q., Colangelo, C.M., Lewis, L.M., Summers, M.F., Scott, R.A.
Deposit date:1996-03-27
Release date:1996-08-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon.
Nat.Struct.Biol., 3, 1996
1RLY
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RDC-DERIVED MODELS OF THE ZINC RIBBON DOMAIN OF HUMAN GENERAL TRANSCRIPTION TFIIB (ZINC BOUND STRUCTURES)
Descriptor:Transcription initiation factor IIB, ZINC ION
Authors:Ghosh, M., Ikura, M.
Deposit date:2003-11-26
Release date:2004-05-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB.
Biochem.J., 378, 2004
1RO4
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RDC-DERIVED MODELS OF THE ZINC RIBBON DOMAIN OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB (ZINC FREE STRUCTURES)
Descriptor:Transcription initiation factor IIB
Authors:Ghosh, M., Ikura, M.
Deposit date:2003-12-01
Release date:2004-05-25
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Probing Zn2+-binding effects on the zinc-ribbon domain of human general transcription factor TFIIB.
Biochem.J., 378, 2004
3WWL
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CRYSTAL STRUCTURE OF LYSINE BIOSYNTHETIC AMINO ACID CARRIER PROTEIN LYSW FROM THERMUS THERMOPHILUS CONJUGATED WITH ALPHA-AMINOADIPATE
Descriptor:2-AMINOHEXANEDIOIC ACID, OrfF, ZINC ION
Authors:Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2014-06-21
Release date:2014-11-19
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
J.Biol.Chem., 2014
3K1F
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CRYSTAL STRUCTURE OF RNA POLYMERASE II IN COMPLEX WITH TFIIB
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Kostrewa, D., Zeller, M.E., Armache, K.-J., Seizl, M., Leike, K., Thomm, M., Cramer, P.
Deposit date:2009-09-27
Release date:2009-11-10
Last modified:2013-05-01
Method:X-RAY DIFFRACTION (4.3 Å)
Cite:RNA polymerase II-TFIIB structure and mechanism of transcription initiation.
Nature, 462, 2009
3K7A
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CRYSTAL STRUCTURE OF AN RNA POLYMERASE II-TFIIB COMPLEX
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
Authors:Liu, X., Bushnell, D.A., Wang, D., Calero, G., Kornberg, R.D.
Deposit date:2009-10-12
Release date:2009-11-24
Last modified:2012-09-05
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.
Science, 327, 2010
3WWN
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CRYSTAL STRUCTURE OF LYSZ FROM THERMUS THERMOPHILUS COMPLEX WITH LYSW
Descriptor:OrfF, Putative acetylglutamate kinase-like protein, SULFATE ION, ...
Authors:Yoshida, A., Tomita, T., Kuzuyama, T., Nishiyama, M.
Deposit date:2014-06-21
Release date:2014-11-19
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ-LysW complex from Thermus thermophilus
J.Biol.Chem., 2014
4BBR
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STRUCTURE OF RNA POLYMERASE II-TFIIB COMPLEX
Descriptor:DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Sainsbury, S., Niesser, J., Cramer, P.
Deposit date:2012-09-27
Release date:2012-11-14
Last modified:2013-01-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
Nature, 493, 2013
4BBS
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STRUCTURE OF AN INITIALLY TRANSCRIBING RNA POLYMERASE II-TFIIB COMPLEX
Descriptor:5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ...
Authors:Sainsbury, S., Niesser, J., Cramer, P.
Deposit date:2012-09-27
Release date:2012-11-14
Last modified:2013-01-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
Nature, 493, 2013
4V1N
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ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX
Descriptor:DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.
Deposit date:2014-09-29
Release date:2015-02-04
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Architecture of the RNA Polymerase II-Mediator Core Initiation Complex.
Nature, 518, 2015
4V1O
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ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX
Descriptor:DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C., Lariviere, L., Wenzeck, L., Hemann, M., Tegunov, D., Petrotchenko, E.V., Borchers, C.H., Baumeister, W., Herzog, F., Villa, E., Cramer, P.
Deposit date:2014-09-29
Release date:2015-02-04
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Architecture of the RNA Polymerase II-Mediator Core Initiation Complex.
Nature, 518, 2015
5EIN
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CRYSTAL STRUCTURE OF C148A MUTANT OF LYSY FROM THERMUS THERMOPHILUS IN COMPLEX WITH NADP+ AND LYSW-GAMMA-AMINOADIPIC ACID
Descriptor:2-AMINOHEXANEDIOIC ACID, FORMIC ACID, N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase, ...
Authors:Shimizu, T., Tomita, T., Nishiyama, M.
Deposit date:2015-10-30
Release date:2016-03-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the LysYLysW Complex from Thermus thermophilus.
J.Biol.Chem., 291, 2016
5EIO
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CRYSTAL STRUCTURE OF LYSY FROM THERMUS THERMOPHILUS COMPLEXED WITH NADP+ AND LYSW-GAMMA-AMINOADIPIC SEMIALDEHYDE
Descriptor:ACETIC ACID, N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Shimizu, T., Tomita, T., Nishiyama, M.
Deposit date:2015-10-30
Release date:2016-03-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the LysYLysW Complex from Thermus thermophilus.
J.Biol.Chem., 291, 2016
5FMF
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THE P-LOBE OF RNA POLYMERASE II PRE-INITIATION COMPLEX
Descriptor:DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ...
Authors:Murakami, K., Tsai, K., Kalisman, N., Bushnell, D.A., Asturias, F.J., Kornberg, R.D.
Deposit date:2015-11-03
Release date:2015-11-25
Last modified:2017-07-12
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structure of an RNA Polymerase II Pre-Initiation Complex
Proc.Natl.Acad.Sci.USA, 112, 2015
5FYW
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TRANSCRIPTION INITIATION COMPLEX STRUCTURES ELUCIDATE DNA OPENING (OC)
Descriptor:DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C., Hantsche, M., Dienemann, C., Burzinski, C., Plitzko, J., Cramer, P.
Deposit date:2016-03-10
Release date:2016-05-18
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Transcription Initiation Complex Structures Elucidate DNA Opening
Nature, 533, 2016
5FZ5
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TRANSCRIPTION INITIATION COMPLEX STRUCTURES ELUCIDATE DNA OPENING (CC)
Descriptor:DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
Authors:Plaschka, C., Hantsche, M., Dienemann, C., Burzinski, C., Plitzko, J., Cramer, P.
Deposit date:2016-03-10
Release date:2016-05-18
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Transcription Initiation Complex Structures Elucidate DNA Opening
Nature, 533, 2016
5GPY
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CRYSTAL STRUCTURE OF THE HUMAN TFIIE COMPLEX
Descriptor:General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta, ZINC ION
Authors:Obita, T., Miwa, K., Kojima, R., Ohkuma, Y., Tamura, Y., Mizuguchi, M.
Deposit date:2016-08-05
Release date:2016-11-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution
J.Mol.Biol., 428, 2016
5IY6
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HUMAN HOLO-PIC IN THE CLOSED STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IY7
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HUMAN HOLO-PIC IN THE OPEN STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IY8
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HUMAN HOLO-PIC IN THE INITIAL TRANSCRIBING STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IY9
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HUMAN HOLO-PIC IN THE INITIAL TRANSCRIBING STATE (NO IIS)
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IYA
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HUMAN CORE-PIC IN THE CLOSED STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IYB
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HUMAN CORE-PIC IN THE OPEN STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
5IYC
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HUMAN CORE-PIC IN THE INITIAL TRANSCRIBING STATE
Descriptor:DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
Authors:He, Y., Yan, C., Fang, J., Inouye, C., Tjian, R., Ivanov, I., Nogales, E.
Deposit date:2016-03-24
Release date:2016-05-18
Last modified:2017-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016
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