2D3Q
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CRYSTAL STRUCTURE OF A DECOLORIZING PEROXIDASE (DYP) THAT CATALYSES THE BIOLOGICAL OXIDATION OF ANTHRAQUINONE DERIVATIVES
Descriptor:Decolorizing Peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sato, T., Sugano, Y., Shoda, M.
Deposit date:2005-09-30
Release date:2006-09-30
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
2GVK
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CRYSTAL STRUCTURE OF A DYE-DECOLORIZING PEROXIDASE (DYP) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.6 A RESOLUTION
Descriptor:Heme peroxidase, CHLORIDE ION, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-05-02
Release date:2006-05-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.
Proteins, 69, 2007
2HAG
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CRYSTAL STRUCTURE OF A PUTATIVE DYP-TYPE PEROXIDASE PROTEIN (SO_0740) FROM SHEWANELLA ONEIDENSIS AT 2.75 A RESOLUTION
Descriptor:Melanin biosynthesis protein TyrA, putative
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-06-12
Release date:2006-08-08
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.
Proteins, 69, 2007
2IIZ
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CRYSTAL STRUCTURE OF PUTATIVE MELANIN BIOSYNTHESIS PROTEIN TYRA WITH BOUND HEME (NP_716371.1) FROM SHEWANELLA ONEIDENSIS AT 2.30 A RESOLUTION
Descriptor:Melanin biosynthesis protein TyrA, putative, SODIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-09-28
Release date:2006-11-14
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.
Proteins, 69, 2007
2Y4D
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X-RAY CRYSTALLOGRAPHIC STRUCTURE OF E. COLI APO-EFEB
Descriptor:PEROXIDASE YCDB, SULFATE ION, TETRAETHYLENE GLYCOL, ...
Authors:Bamford, V.A., Andrews, S.C., Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
2Y4E
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X-RAY CRYSTALLOGRAPHIC STRUCTURE OF E. COLI PPIX-EFEB
Descriptor:PEROXIDASE YCDB, PROTOPORPHYRIN IX, SULFATE ION, ...
Authors:Bamford, V.A., Andrews, S.C., Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
2Y4F
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X-RAY CRYSTALLOGRAPHIC STRUCTURE OF E. COLI HEME-EFEB
Descriptor:PEROXIDASE YCDB, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Bamford, V.A., Andrews, S.C., Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
3AFV
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DYE-DECOLORIZING PEROXIDASE (DYP) AT 1.4 A RESOLUTION
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, N-ACETYL-D-GLUCOSAMINE
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2010-03-11
Release date:2011-03-16
Last modified:2011-10-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
3MM1
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DYE-DECOLORIZING PEROXIDASE (DYP) D171N
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, N-ACETYL-D-GLUCOSAMINE
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2010-04-19
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
3MM2
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DYE-DECOLORIZING PEROXIDASE (DYP) IN COMPLEX WITH CYANIDE
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2010-04-19
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
3MM3
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DYE-DECOLORIZING PEROXIDASE (DYP) D171N IN COMPLEX WITH CYANIDE
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, CYANIDE ION
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2010-04-19
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
3O72
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CRYSTAL STRUCTURE OF EFEB IN COMPLEX WITH HEME
Descriptor:Redox component of a tripartite ferrous iron transporter, PROTOPORPHYRIN IX CONTAINING FE, OXYGEN MOLECULE
Authors:Liu, X., Du, Q., Wang, Z., Zhu, D., Huang, Y., Li, N., Xu, S., Gu, L.
Deposit date:2010-07-30
Release date:2011-03-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical features of EfeB/YcdB from Escherichia coli O157: ASP235 plays divergent roles in different enzyme-catalyzed processes
J.Biol.Chem., 286, 2011
3QNR
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DYPB FROM RHODOCOCCUS JOSTII RHA1, CRYSTAL FORM 1
Descriptor:DyP Peroxidase, PROTOPORPHYRIN IX CONTAINING FE, FORMIC ACID, ...
Authors:Singh, R., Roberts, J.N., Grigg, J.C., Eltis, L.D., Murphy, M.E.P.
Deposit date:2011-02-09
Release date:2011-04-27
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Biochemistry, 50, 2011
3QNS
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DYPB FROM RHODOCOCCUS JOSTII RHA1, CRYSTAL FORM 2
Descriptor:DyP Peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Grigg, J.C., Roberts, J.N., Singh, R., Eltis, L.D., Murphy, M.E.P.
Deposit date:2011-02-09
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Biochemistry, 50, 2011
3VEC
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RHODOCOCCUS JOSTII RHA1 DYPB D153A VARIANT IN COMPLEX WITH HEME
Descriptor:DypB, PROTOPORPHYRIN IX CONTAINING FE, CHLORIDE ION, ...
Authors:Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VED
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RHODOCOCCUS JOSTII RHA1 DYPB D153H VARIANT IN COMPLEX WITH HEME
Descriptor:DypB, PROTOPORPHYRIN IX CONTAINING FE, CHLORIDE ION, ...
Authors:Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEE
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RHODOCOCCUS JOSTII RHA1 DYPB N246A VARIANT IN COMPLEX WITH HEME
Descriptor:DypB, PROTOPORPHYRIN IX CONTAINING FE, CHLORIDE ION, ...
Authors:Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2012-08-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEF
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RHODOCOCCUS JOSTII RHA1 DYPB N246H VARIANT IN COMPLEX WITH HEME
Descriptor:DypB, PROTOPORPHYRIN IX CONTAINING FE, CHLORIDE ION
Authors:Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEG
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RHODOCOCCUS JOSTII RHA1 DYPB R244L VARIANT IN COMPLEX WITH HEME
Descriptor:DypB, PROTOPORPHYRIN IX CONTAINING FE, CHLORIDE ION
Authors:Grigg, J.C., Singh, R., Armstrong, Z., Eltis, L.D., Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VXI
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DYE-DECOLORIZING PEROXIDASE (DYP) COMPLEX WITH ASCORBIC ACID
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, ASCORBIC ACID
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2012-09-14
Release date:2012-11-07
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dye-decolorizing peroxidase (DyP) complex with ascorbic acid
to be published
3VXJ
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DYE-DECOLORIZING PEROXIDASE (DYP) COMPLEX WITH 2,6-DIMETHOXYPHENOL
Descriptor:DyP, PROTOPORPHYRIN IX CONTAINING FE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Sugano, Y., Yoshida, T., Tsuge, H.
Deposit date:2012-09-14
Release date:2012-11-07
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Dye-decolorizing peroxidase (DyP) complex with 2,6-dimethoxyphenol
to be published
4AU9
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CRYSTAL STRUCTURE OF A FUNGAL DYP-TYPE PEROXIDASE FROM AURICULARIA AURICULA-JUDAE
Descriptor:DYP-TYPE PEROXIDASE I, PROTOPORPHYRIN IX CONTAINING FE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Strittmatter, E., Pecyna, M., Ullrich, R., Hofrichter, M., Plattner, D.A., Liers, C., Piontek, K.
Deposit date:2012-05-14
Release date:2012-12-26
Last modified:2015-01-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:First Crystal Structure of a Fungal High-Redox Potential Dye-Decolorizing Peroxidase: Substrate Interaction Sites and Long-Range Electron Transfer.
J.Biol.Chem., 288, 2013
4GRC
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CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE (SCO2276) FROM STREPTOMYCES COELICOLOR
Descriptor:Putative membrane protein, CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Lukk, T., Hetta, A.M.A., Jones, A., Solbiati, J., Majumdar, S., Cronan, J.E., Gerlt, J.A., Nair, S.K.
Deposit date:2012-08-24
Release date:2013-09-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:DyP-type peroxidases from Stretptomyces and Thermobifida can modify organosolv lignin.
To be Published
4GS1
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CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE FROM THERMOBIFIDA CELLULOSILYTICA
Descriptor:DyP-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE, OXYGEN MOLECULE, ...
Authors:Lukk, T., Hetta, A.M.A., Jones, A., Solbiati, J., Majumdar, S., Cronan, J.E., Gerlt, J.A., Nair, S.K.
Deposit date:2012-08-27
Release date:2013-09-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:DyP-type peroxidases from Stretptomyces and Thermobifida can modify organosolv lignin.
To be Published
4GT2
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CRYSTAL STRUCTURE OF DYP-TYPE PEROXIDASE (SCO3963) FROM STREPTOMYCES COELICOLOR
Descriptor:Putative uncharacterized protein SCO3963, PROTOPORPHYRIN IX CONTAINING FE, GLYCEROL, ...
Authors:Lukk, T., Hetta, A.M.A., Jones, A., Solbiati, J., Majumdar, S., Cronan, J.E., Gerlt, J.A., Nair, S.K.
Deposit date:2012-08-28
Release date:2013-09-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:DyP-type peroxidases from Stretptomyces and Thermobifida can modify organosolv lignin.
To be Published
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