Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FW4
DownloadVisualize
BU of 5fw4 by Molmil
Structure of Thermobifida fusca DyP-type Peroxidase and Activity towards Kraft Lignin and Lignin Model Compounds
Descriptor: DYE-DECOLORIZING PEROXIDASE TFU_3078, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Rahmanpour, R, Rea, D, Jamshidi, S, Fulop, V, Bugg, T.D.H.
Deposit date:2016-02-11
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Thermobifida Fusca Dyp-Type Peroxidase and Activity Towards Kraft Lignin and Lignin Model Compounds.
Arch.Biochem.Biophys., 594, 2016
4HOV
DownloadVisualize
BU of 4hov by Molmil
DypB N246A in complex with manganese
Descriptor: CHLORIDE ION, DypB, FORMIC ACID, ...
Authors:Grigg, J.C, Singh, R, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-10-22
Release date:2013-01-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Improved Manganese-Oxidizing Activity of DypB, a Peroxidase from a Lignolytic Bacterium.
Acs Chem.Biol., 8, 2013
7E5Q
DownloadVisualize
BU of 7e5q by Molmil
Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis at acidic pH
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ...
Authors:Dhankhar, P, Dalal, V, Kumar, P.
Deposit date:2021-02-19
Release date:2022-08-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights at acidic pH of dye-decolorizing peroxidase from Bacillus subtilis.
Proteins, 2022
5GT2
DownloadVisualize
BU of 5gt2 by Molmil
Crystal Structure and Biochemical Features of dye-decolorizing peroxidase YfeX from Escherichia coli O157
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Probable deferrochelatase/peroxidase YfeX
Authors:Ma, Y.L, Yuan, Z.G, Liu, S, Wang, J.X, Gu, L.C, Liu, X.H.
Deposit date:2016-08-18
Release date:2017-02-08
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.093 Å)
Cite:Crystal structure and biochemical features of dye-decolorizing peroxidase YfeX from Escherichia coli O157 Asp(143) and Arg(232) play divergent roles toward different substrates
Biochem. Biophys. Res. Commun., 484, 2017
5JXU
DownloadVisualize
BU of 5jxu by Molmil
Structural basis for the catalytic activity of Thermomonospora curvata heme-containing DyP-type peroxidase.
Descriptor: Dyp-type peroxidase family, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ramyar, K.X, Carlson, E.A, Li, P, Geisbrecht, B.V.
Deposit date:2016-05-13
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:Identification of Surface-Exposed Protein Radicals and A Substrate Oxidation Site in A-Class Dye-Decolorizing Peroxidase from Thermomonospora curvata.
ACS Catal, 6, 2016
8CK9
DownloadVisualize
BU of 8ck9 by Molmil
DyP-type peroxidase from Thermobifida halotolerans
Descriptor: NITRATE ION, PROTOPORPHYRIN IX CONTAINING FE, Peroxidase
Authors:Pupart, H, Lukk, T.
Deposit date:2023-02-14
Release date:2024-02-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dye-decolorizing peroxidase of Thermobifida halotolerance displays complex kinetics with both substrate inhibition and apparent positive cooperativity.
Arch.Biochem.Biophys., 754, 2024
6TB8
DownloadVisualize
BU of 6tb8 by Molmil
Dye Type Peroxidase Aa from Streptomyces lividans: spectroscopically-validated ferric state
Descriptor: Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lucic, M, Moreno-Chicano, T.M, Hough, M.A, Dworkowski, F.S.N, Worrall, J.A.R.
Deposit date:2019-11-01
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A subtle structural change in the distal haem pocket has a remarkable effect on tuning hydrogen peroxide reactivity in dye decolourising peroxidases from Streptomyces lividans.
Dalton Trans, 49, 2020
5VJ0
DownloadVisualize
BU of 5vj0 by Molmil
Crystal Structure of heme-containing DyP Type Peroxidase from Enterobacter lignolyticus
Descriptor: Dyp-type peroxidase family, PROTOPORPHYRIN IX CONTAINING FE
Authors:Meekins, D.A, Li, P, Geisbrecht, B.V.
Deposit date:2017-04-17
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Mechanistic Insights into Dye-Decolorizing Peroxidase Revealed by Solvent Isotope and Viscosity Effects.
ACS Catal, 7, 2017
5DE0
DownloadVisualize
BU of 5de0 by Molmil
Dye-decolorizing protein from V. cholerae
Descriptor: Deferrochelatase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Uchida, T, Sasaki, M, Tanaka, Y, Yao, M.
Deposit date:2015-08-25
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:A Dye-Decolorizing Peroxidase from Vibrio cholerae.
Biochemistry, 54, 2015
7BOK
DownloadVisualize
BU of 7bok by Molmil
Cryo-EM structure of the encapsulated DyP-type peroxidase from Mycobacterium smegmatis
Descriptor: Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tang, Y.T, Mu, A, Gong, H.R, Wang, Q, Rao, Z.H.
Deposit date:2020-03-19
Release date:2021-03-24
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of Mycobacterium smegmatis DyP-loaded encapsulin.
Proc.Natl.Acad.Sci.USA, 118, 2021
7YLO
DownloadVisualize
BU of 7ylo by Molmil
Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
Descriptor: Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Cheng, J, Luo, Y, Zhu, J, Tan, R, Wang, N, Lebedev, A.A.
Deposit date:2022-07-26
Release date:2023-07-05
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
To Be Published
7ZMJ
DownloadVisualize
BU of 7zmj by Molmil
SFX structure of dye-type peroxidase DtpB R243A variant in the ferric state
Descriptor: MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Putative dye-decolorizing peroxidase (DyP), ...
Authors:Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
Deposit date:2022-04-19
Release date:2022-12-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
6KMN
DownloadVisualize
BU of 6kmn by Molmil
Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Deferrochelatase/peroxidase EfeB, ...
Authors:Dhankhar, P, Dalal, V, Mahto, J.K, Kumar, P.
Deposit date:2019-07-31
Release date:2020-10-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Characterization of dye-decolorizing peroxidase from Bacillus subtilis.
Arch.Biochem.Biophys., 693, 2020
6KMM
DownloadVisualize
BU of 6kmm by Molmil
Crystal Structure of HEPES bound Dye Decolorizing peroxidase from Bacillus subtilis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Dhankhar, P, Dalal, V, Mahto, J.K, Kumar, P.
Deposit date:2019-07-31
Release date:2020-10-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Characterization of dye-decolorizing peroxidase from Bacillus subtilis.
Arch.Biochem.Biophys., 693, 2020
8FJQ
DownloadVisualize
BU of 8fjq by Molmil
Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293G mutant
Descriptor: Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Khadka, S, Li, P, Geisbrecht, B.V.
Deposit date:2022-12-20
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293G mutant
To Be Published
8FJR
DownloadVisualize
BU of 8fjr by Molmil
Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293H mutant
Descriptor: Dyp-type peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Khadka, S, Li, P, Geisbrecht, B.V.
Deposit date:2022-12-20
Release date:2023-11-29
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Thermomonospora curvata heme-containing DyP-type peroxidase E293H mutant
To Be Published
7DLK
DownloadVisualize
BU of 7dlk by Molmil
Crystal Structure of veratryl alcohol bound Dye Decolorizing peroxidase from Bacillus subtilis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Dhankhar, P, Dalal, V, Kumar, P.
Deposit date:2020-11-27
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of dye-decolorizing peroxidase from Bacillus subtilis in complex with veratryl alcohol.
Int.J.Biol.Macromol., 193, 2021
3O72
DownloadVisualize
BU of 3o72 by Molmil
Crystal structure of EfeB in complex with heme
Descriptor: OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, Redox component of a tripartite ferrous iron transporter
Authors:Liu, X, Du, Q, Wang, Z, Zhu, D, Huang, Y, Li, N, Xu, S, Gu, L.
Deposit date:2010-07-30
Release date:2011-03-16
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical features of EfeB/YcdB from Escherichia coli O157: ASP235 plays divergent roles in different enzyme-catalyzed processes
J.Biol.Chem., 286, 2011
2Y4D
DownloadVisualize
BU of 2y4d by Molmil
X-ray crystallographic structure of E. coli apo-EfeB
Descriptor: ACETATE ION, GLYCEROL, PEROXIDASE YCDB, ...
Authors:Bamford, V.A, Andrews, S.C, Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
2Y4F
DownloadVisualize
BU of 2y4f by Molmil
X-ray crystallographic structure of E. coli heme-EfeB
Descriptor: GLYCEROL, PEROXIDASE YCDB, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bamford, V.A, Andrews, S.C, Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
2IIZ
DownloadVisualize
BU of 2iiz by Molmil
Crystal structure of putative melanin biosynthesis protein TyrA with bound heme (NP_716371.1) from Shewanella Oneidensis at 2.30 A resolution
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Melanin biosynthesis protein TyrA, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-09-28
Release date:2006-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.
Proteins, 69, 2007
2Y4E
DownloadVisualize
BU of 2y4e by Molmil
X-ray crystallographic structure of E. coli ppix-EfeB
Descriptor: PEROXIDASE YCDB, PROTOPORPHYRIN IX, SULFATE ION, ...
Authors:Bamford, V.A, Andrews, S.C, Watson, K.A.
Deposit date:2011-01-05
Release date:2011-01-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Efeb, the Peroxidase Component of the Efeuob Bacterial Fe(II) Transport System, Also Shows Novel Removal of Iron from Heme
To be Published
2HAG
DownloadVisualize
BU of 2hag by Molmil
Crystal structure of a putative dyp-type peroxidase protein (so_0740) from shewanella oneidensis at 2.75 A resolution
Descriptor: Melanin biosynthesis protein TyrA, putative
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-06-12
Release date:2006-08-08
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.
Proteins, 69, 2007
3QNS
DownloadVisualize
BU of 3qns by Molmil
DyPB from Rhodococcus jostii RHA1, crystal form 2
Descriptor: DyP Peroxidase, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Grigg, J.C, Roberts, J.N, Singh, R, Eltis, L.D, Murphy, M.E.P.
Deposit date:2011-02-09
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Biochemistry, 50, 2011
3QNR
DownloadVisualize
BU of 3qnr by Molmil
DyPB from Rhodococcus jostii RHA1, crystal form 1
Descriptor: DyP Peroxidase, FORMIC ACID, GLYCEROL, ...
Authors:Singh, R, Roberts, J.N, Grigg, J.C, Eltis, L.D, Murphy, M.E.P.
Deposit date:2011-02-09
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Biochemistry, 50, 2011

 

1234>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon