1FBN
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CRYSTAL STRUCTURE OF A FIBRILLARIN HOMOLOGUE FROM METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.6 A
Descriptor:MJ FIBRILLARIN HOMOLOGUE
Authors:Wang, H., Boisvert, D., Kim, K.K., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)
Deposit date:1999-04-25
Release date:2000-04-26
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.
EMBO J., 19, 2000
1G8S
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METHANOCOCCUS JANNASCHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN
Descriptor:FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
Authors:Boisvert, D.C., Kim, S.H.
Deposit date:2000-11-20
Release date:2003-10-14
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Structural Approach to Gene Function and Structure Quality for Pyrococcus horikshii Fibrillarin
To be Published
3ID6
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CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS NOP5 (1-262) AND FIBRILLARIN COMPLEX
Descriptor:Pre mRNA splicing protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
4DF3
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CRYSTAL STRUCTURE OF AEROPYRUM PERNIX FIBRILLARIN IN COMPLEX WITH NATIVELY BOUND S-ADENOSYL-L-METHIONINE AT 1.7A
Descriptor:Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:de Silva, U.
Deposit date:2012-01-22
Release date:2012-08-08
Last modified:2013-02-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure of Aeropyrum pernix fibrillarin in complex with natively bound S-adenosyl-L-methionine at 1.7 A resolution.
Acta Crystallogr.,Sect.F, 68, 2012
1NT2
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CRYSTAL STRUCTURE OF FIBRILLARIN/NOP5P COMPLEX
Descriptor:Fibrillarin-like pre-rRNA processing protein, conserved hypothetical protein
Authors:Aittaleb, M., Rashid, R., Chen, Q., Palmer, J.R., Daniels, C.J., Li, H.
Deposit date:2003-01-28
Release date:2003-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and function of archaeal box C/D sRNP core proteins.
Nat.Struct.Biol., 10, 2003
2IPX
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HUMAN FIBRILLARIN
Descriptor:rRNA 2'-O-methyltransferase fibrillarin (E.C.2.1.1.-)
Authors:Min, J., Wu, H., Zeng, H., Loppnau, P., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)
Deposit date:2006-10-12
Release date:2006-10-24
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Crystal Structure of Human Fibrillarin in complex with SAH
To be Published
5WYJ
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CRYO-EM STRUCTURE OF THE 90S SMALL SUBUNIT PRE-RIBOSOME (DHR1-DEPLETED, ENP1-TAP, STATE 1)
Descriptor:rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, Nucleolar protein 58, Ribosomal RNA-processing protein 9, 13 kDa ribonucleoprotein-associated protein, Utp4, Utp5, Utp8, Utp9, U3 small nucleolar RNA-associated protein 10,Utp10, Utp15, Utp17, Ribosome biogenesis protein BMS1, Periodic tryptophan protein 2, U3 small nucleolar RNA-associated protein 12, U3 small nucleolar RNA-associated protein 13, U3 small nucleolar RNA-associated protein 18, U3 small nucleolar RNA-associated protein 21, Ribosomal RNA-processing protein 7, U3 small nucleolar RNA-associated protein 22, Ribosomal RNA small subunit methyltransferase NEP1, Essential nuclear protein 1, Enp2, KRR1 small subunit processome component, U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar ribonucleoprotein protein IMP4, Mpp10,U3 small nucleolar RNA-associated protein MPP10, Pre-rRNA-processing protein PNO1, RNA 3'-terminal phosphate cyclase-like protein, rRNA biogenesis protein RRP5, Sof1, 40S ribosomal protein S1-A, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 40S ribosomal protein S12, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S16-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S27-A, 40S ribosomal protein S28-A, 40S ribosomal protein S30-A, Ubiquitin-40S ribosomal protein S31, Utp7, Utp11, Utp20, rRNA-processing protein FCF1, Ribosome biogenesis protein UTP30, Helical domain protein, Unassigned helices/RNA Complex
Authors:Ye, K., Zhu, X., Sun, Q.
Deposit date:2017-01-13
Release date:2017-03-29
Last modified:2017-05-17
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017
5WYK
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CRYO-EM STRUCTURE OF THE 90S SMALL SUBUNIT PRE-RIBOSOME (MTR4-DEPLETED, ENP1-TAP)
Descriptor:rRNA 2'-O-methyltransferase fibrillarin, Nucleolar protein 56, Nucleolar protein 58, Ribosomal RNA-processing protein 9, 13 kDa ribonucleoprotein-associated protein, Utp4, Utp5, Utp8, Utp9, U3 small nucleolar RNA-associated protein 10, Utp15, Utp17, Ribosome biogenesis protein BMS1, Periodic tryptophan protein 2, U3 small nucleolar RNA-associated protein 12, U3 small nucleolar RNA-associated protein 13, U3 small nucleolar RNA-associated protein 18, U3 small nucleolar RNA-associated protein 21, Ribosomal RNA-processing protein 7, U3 small nucleolar RNA-associated protein 22, Ribosomal RNA small subunit methyltransferase NEP1, Enp2, KRR1 small subunit processome component, U3 small nucleolar ribonucleoprotein protein IMP3, U3 small nucleolar ribonucleoprotein protein IMP4, Mpp10,U3 small nucleolar RNA-associated protein MPP10, Pre-rRNA-processing protein PNO1, RNA 3'-terminal phosphate cyclase-like protein, Sof1, 40S ribosomal protein S1-A, 40S ribosomal protein S4-A, 40S ribosomal protein S5, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 40S ribosomal protein S16-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S27-A, 40S ribosomal protein S28-A, 40S ribosomal protein S30-A, Utp7, Utp11, rRNA-processing protein FCF1, Ribosome biogenesis protein UTP30, Helical domain protein, Unassigned helices/RNA Complex
Authors:Ye, K., Zhu, X., Sun, Q.
Deposit date:2017-01-13
Release date:2017-03-29
Last modified:2017-05-17
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome.
Elife, 6, 2017
1G8A
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PYROCOCCUS HORIKOSHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN
Descriptor:FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
Authors:Boisvert, D.C., Kim, S.H., Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-11-16
Release date:2003-10-14
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Structural Approach to Gene Function and Structure Quality for Pyrococcus horikoshii Fibrillarin
To be Published
1PRY
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STRUCTURE DETERMINATION OF FIBRILLARIN HOMOLOGUE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS FURIOSUS (PFU-65527)
Descriptor:Fibrillarin-like pre-rRNA processing protein
Authors:Deng, L., Starostina, N.G., Liu, Z.-J., Rose, J.P., Terns, R.M., Terns, M.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2003-06-20
Release date:2004-03-09
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus
Biochem.Biophys.Res.Commun., 315, 2004
2NNW
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ALTERNATIVE CONFORMATIONS OF NOP56/58-FIBRILLARIN COMPLEX AND IMPLICATION FOR INDUCED-FIT ASSENLY OF BOX C/D RNPS
Descriptor:NOP5/NOP56 related protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:Oruganti, S., Zhang, Y., Terns, R., Terns, M.P., Li, H.
Deposit date:2006-10-24
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Alternative Conformations of the Archaeal Nop56/58-Fibrillarin Complex Imply Flexibility in Box C/D RNPs.
J.Mol.Biol., 371, 2007
2YXE
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CRYSTAL STRUCTURE OF L-ISOASPARTYL PROTEIN CARBOXYL METHYLTRANFERASE
Descriptor:Protein-L-isoaspartate O-methyltransferase (E.C.2.1.1.77)
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
To be Published
2YXL
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CRYSTAL STRUCTURE OF PH0851
Descriptor:450aa long hypothetical fmu protein
Authors:Hikida, Y., Kuratani, M., Bessho, Y., Ishii, R., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase
Acta Crystallogr.,Sect.D, 66, 2010
3DH0
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CRYSTAL STRUCTURE OF A SAM DEPENDENT METHYLTRANSFERASE FROM AQUIFEX AEOLICUS
Descriptor:SAM dependent methyltransferase
Authors:Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-06-16
Release date:2008-07-15
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Crystal structure of a SAM dependent methyltransferase from Aquifex aeolicus
To be Published
3ID5
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CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS C/D RNP ASSEMBLED WITH NOP5, FIBRILLARIN, L7AE AND A SPLIT HALF C/D RNA
Descriptor:Pre mRNA splicing protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-), 50S ribosomal protein L7Ae/RNA complex
Authors:Ye, K.
Deposit date:2009-07-20
Release date:2009-08-25
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (4.01 Å)
Cite:Structural organization of box C/D RNA-guided RNA methyltransferase.
Proc.Natl.Acad.Sci.USA, 106, 2009
3NMU
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CRYSTAL STRUCTURE OF SUBSTRATE-BOUND HALFMER BOX C/D RNP
Descriptor:NOP5/NOP56 related protein, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:Li, H., Xue, S., Wang, R.
Deposit date:2010-06-22
Release date:2011-05-25
Method:X-RAY DIFFRACTION (2.729 Å)
Cite:Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
3NVK
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STRUCTURAL BASIS FOR SUBSTRATE PLACEMENT BY AN ARCHAEAL BOX C/D RIBONUCLEOPROTEIN PARTICLE
Descriptor:NOP5/NOP56 related protein, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:Xue, S., Wang, R., Li, H.
Deposit date:2010-07-08
Release date:2011-07-20
Method:X-RAY DIFFRACTION (3.209 Å)
Cite:Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
3NVM
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STRUCTURAL BASIS FOR SUBSTRATE PLACEMENT BY AN ARCHAEAL BOX C/D RIBONUCLEOPROTEIN PARTICLE
Descriptor:NOP5/NOP56 related protein, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)
Authors:Xue, S., Wang, R., Li, H.
Deposit date:2010-07-08
Release date:2011-07-20
Method:X-RAY DIFFRACTION (3.408 Å)
Cite:Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle.
Mol.Cell, 39, 2010
3PLA
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CRYSTAL STRUCTURE OF A CATALYTICALLY ACTIVE SUBSTRATE-BOUND BOX C/D RNP FROM SULFOLOBUS SOLFATARICUS
Descriptor:Pre mRNA splicing protein, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (E.C.2.1.1.-)/RNA complex
Authors:Lin, J., Lai, S., Jia, R., Xu, A., Zhang, L., Lu, J., Ye, K.
Deposit date:2010-11-15
Release date:2011-01-26
Last modified:2011-02-02
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis for site-specific ribose methylation by box C/D RNA protein complexes
Nature, 469, 2011
4BY9
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THE STRUCTURE OF THE BOX CD ENZYME REVEALS REGULATION OF RRNA METHYLATION
Descriptor:NOP5/NOP56 RELATED PROTEIN, 50S RIBOSOMAL PROTEIN L7AE, FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE/RNA Complex
Authors:Lapinaite, A., Simon, B., Skjaerven, L., Rakwalska-Bange, M., Gabel, F., Carlomagno, T.
Deposit date:2013-07-18
Release date:2013-10-09
Last modified:2016-05-04
Method:SOLUTION NMR
Cite:The Structure of the Box C/D Enzyme Reveals Regulation of RNA Methylation.
Nature, 502, 2013
5GIN
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CRYSTAL STRUCTURE OF BOX C/D RNP WITH 12 NT GUIDE REGIONS AND 9 NT SUBSTRATES
Descriptor:C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase/RNA Complex
Authors:Yang, Z., Lin, J., Ye, K.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2016-10-12
Method:X-RAY DIFFRACTION (3.308 Å)
Cite:Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Proc.Natl.Acad.Sci.USA, 113, 2016
5GIO
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CRYSTAL STRUCTURE OF BOX C/D RNP WITH 12 NT GUIDE REGIONS AND 13 NT SUBSTRATES
Descriptor:C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase/RNA Complex
Authors:Yang, Z., Lin, J., Ye, K.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2016-10-12
Method:X-RAY DIFFRACTION (3.604 Å)
Cite:Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Proc.Natl.Acad.Sci.USA, 113, 2016
5GIP
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CRYSTAL STRUCTURE OF BOX C/D RNP WITH 13 NT GUIDE REGIONS AND 11 NT SUBSTRATES
Descriptor:C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, 50S ribosomal protein L7Ae, Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase/RNA Complex
Authors:Yang, Z., Lin, J., Ye, K.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2016-10-12
Method:X-RAY DIFFRACTION (3.129 Å)
Cite:Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Proc.Natl.Acad.Sci.USA, 113, 2016
5JPQ
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CRYO-EM STRUCTURE OF THE 90S PRE-RIBOSOME
Descriptor:WD40 domain proteins, UTP10, UTP-A oligomerization domain, UTP21, UTP6, UTP-B oligomerisation domain, Pre mRNA splicing protein, Snu13, Nop1, rrp9, Rcl1, Bms1, Imp3, Imp4, Utp24, Emg1, KRR1 small subunit processome component, Kre33, Utp30, eS1, eS4, uS7, eS6, eS7, eS8, uS4, uS15, uS11, uS9, uS17, uS8, eS24, eS28/RNA Complex
Authors:Turk, M., Cheng, J., Berninghausen, O., Kornprobst, M., Flemming, D., Kos-Braun, I.C., Kos, M., Thoms, M., Hurt, E., Beckmann, R.
Deposit date:2016-05-04
Release date:2016-07-27
Last modified:2016-08-03
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
Cell, 166, 2016
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