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8ZAN
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BU of 8zan by Molmil
ExoChR2 channelrhodopsin
Descriptor: Archaeal-type opsin 2, RETINAL
Authors:Zhang, M.F.
Deposit date:2024-04-25
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Channelrhodopsins with distinct chromophores and binding patterns.
Nat Commun, 15, 2024
8YEK
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BU of 8yek by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR2
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, GtCCR2, RETINAL
Authors:Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
Deposit date:2024-02-22
Release date:2024-09-04
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 2024
8YEJ
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BU of 8yej by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Descriptor: GtCCR2, RETINAL
Authors:Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
Deposit date:2024-02-22
Release date:2024-09-04
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 2024
8YEL
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BU of 8yel by Molmil
Cryo-EM structure of the channelrhodopsin GtCCR4
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Cation channel rhodopsin 4, RETINAL
Authors:Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O.
Deposit date:2024-02-22
Release date:2024-09-04
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 2024
8QQZ
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BU of 8qqz by Molmil
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 8.0
Descriptor: Bacteriorhodopsin-like protein, DODECYL-BETA-D-MALTOSIDE, EICOSANE
Authors:Kovalev, K, Podoliak, E, Lamm, G.H.U, Marin, E, Stetsenko, A, Guskov, A.
Deposit date:2023-10-06
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:A subgroup of light-driven sodium pumps with an additional Schiff base counterion.
Nat Commun, 15, 2024
8QR0
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BU of 8qr0 by Molmil
Cryo-EM structure of the light-driven sodium pump ErNaR in the pentameric form at pH 4.3
Descriptor: Bacteriorhodopsin-like protein, DODECYL-BETA-D-MALTOSIDE, EICOSANE
Authors:Kovalev, K, Podoliak, E, Lamm, G.H.U, Marin, E, Stetsenko, A, Guskov, A.
Deposit date:2023-10-06
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:A subgroup of light-driven sodium pumps with an additional Schiff base counterion.
Nat Commun, 15, 2024
8QQO
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BU of 8qqo by Molmil
Continuously illuminated structure of Sensory Rhodopsin II solved by serial millisecond crystallography
Descriptor: RETINAL, Sensory rhodopsin-2
Authors:Bosman, R, Ortolani, G, Branden, G, Neutze, R.
Deposit date:2023-10-05
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural basis of the prolonged photocycle of Sensory Rhodopsin II revealed by serial millisecond crystallography
To Be Published
8QLE
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BU of 8qle by Molmil
Crystal structure of the light-driven sodium pump ErNaR in the monomeric form at pH 4.6
Descriptor: Bacteriorhodopsin-like protein, EICOSANE, OLEIC ACID
Authors:Kovalev, K, Podoliak, E, Lamm, G.H.U, Astashkin, R, Bourenkov, G.
Deposit date:2023-09-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A subgroup of light-driven sodium pumps with an additional Schiff base counterion.
Nat Commun, 15, 2024
8QLF
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BU of 8qlf by Molmil
Crystal structure of the light-driven sodium pump ErNaR in the monomeric form at pH 8.8
Descriptor: Bacteriorhodopsin-like protein, EICOSANE, OLEIC ACID
Authors:Kovalev, K, Podoliak, E, Lamm, G.H.U, Astashkin, R, Bourenkov, G.
Deposit date:2023-09-19
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:A subgroup of light-driven sodium pumps with an additional Schiff base counterion.
Nat Commun, 15, 2024
8JH0
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BU of 8jh0 by Molmil
Crystal structure of the light-driven sodium pump IaNaR
Descriptor: RETINAL, Xanthorhodopsin
Authors:Hashimoto, T, Kato, K, Tanaka, Y, Yao, M, Kikukawa, T.
Deposit date:2023-05-22
Release date:2023-11-01
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Multistep conformational changes leading to the gate opening of light-driven sodium pump rhodopsin.
J.Biol.Chem., 299, 2023
8CQC
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BU of 8cqc by Molmil
Cryo-EM structure of pentameric proteorhodopsin A18L mutant
Descriptor: Green-light absorbing proteorhodopsin, RETINAL
Authors:Hirschi, S, Lemmin, T, Fotiadis, D.
Deposit date:2023-03-05
Release date:2024-07-03
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Structural insights into the mechanism and dynamics of proteorhodopsin biogenesis and retinal scavenging.
Nat Commun, 15, 2024
8CQD
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BU of 8cqd by Molmil
Cryo-EM structure of hexameric proteorhodopsin A18L mutant
Descriptor: Green-light absorbing proteorhodopsin, RETINAL
Authors:Hirschi, S, Lemmin, T, Fotiadis, D.
Deposit date:2023-03-05
Release date:2024-07-03
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.54 Å)
Cite:Structural insights into the mechanism and dynamics of proteorhodopsin biogenesis and retinal scavenging.
Nat Commun, 15, 2024
8CNK
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BU of 8cnk by Molmil
Cryo-EM structure of retinal-free proteoopsin bound to decanoate
Descriptor: DECANOIC ACID, Green-light absorbing proteorhodopsin
Authors:Hirschi, S, Lemmin, T, Fotiadis, D.
Deposit date:2023-02-23
Release date:2024-07-03
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structural insights into the mechanism and dynamics of proteorhodopsin biogenesis and retinal scavenging.
Nat Commun, 15, 2024
8CL7
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BU of 8cl7 by Molmil
Krokinobacter eikastus rhodopsin 2 (KR2) in dark state
Descriptor: EICOSANE, RETINAL, Sodium pumping rhodopsin
Authors:Bertrand, Q, Wranik, M, Kepa, M.W, Weinert, T, Standfuss, J.
Deposit date:2023-02-16
Release date:2023-12-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers.
Nat Commun, 14, 2023
8CL8
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BU of 8cl8 by Molmil
Krokinobacter eikastus rhodopsin 2 (KR2) extrapolated map 1us after light activation
Descriptor: EICOSANE, RETINAL, Sodium pumping rhodopsin
Authors:Bertrand, Q, Kepa, M.W, Weinert, T, Wranik, M, Standfuss, J.
Deposit date:2023-02-16
Release date:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers.
Nat Commun, 14, 2023
8I2Z
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BU of 8i2z by Molmil
Cryo-EM structure of the zeaxanthin-bound kin4B8
Descriptor: RETINAL, Xanthorhodopsin, Zeaxanthin
Authors:Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O.
Deposit date:2023-01-15
Release date:2023-03-29
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (2 Å)
Cite:Phototrophy by antenna-containing rhodopsin pumps in aquatic environments.
Nature, 615, 2023
7YTB
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BU of 7ytb by Molmil
Crystal structure of Kin4B8
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Kin4B8, RETINAL
Authors:Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O.
Deposit date:2022-08-14
Release date:2023-03-15
Last modified:2023-03-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Phototrophy by antenna-containing rhodopsin pumps in aquatic environments.
Nature, 615, 2023
8ANQ
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BU of 8anq by Molmil
Crystal structure of the microbial rhodopsin from Sphingomonas paucimobilis (SpaR)
Descriptor: Bacteriorhodopsin, EICOSANE
Authors:Kovalev, K, Okhrimenko, I, Marin, E, Gordeliy, V.
Deposit date:2022-08-05
Release date:2023-05-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Mirror proteorhodopsins.
Commun Chem, 6, 2023
7ZY3
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BU of 7zy3 by Molmil
Room temperature structure of Archaerhodopsin-3 obtained 110 ns after photoexcitation
Descriptor: Archaerhodopsin-3, CALCIUM ION, CHLORIDE ION, ...
Authors:Kwan, T.O.C, Judge, P.J, Moraes, I, Watts, A, Axford, D, Bada Juarez, J.F.
Deposit date:2022-05-23
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A versatile approach to high-density microcrystals in lipidic cubic phase for room-temperature serial crystallography.
J.Appl.Crystallogr., 56, 2023
7XJC
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BU of 7xjc by Molmil
Crystal structure of bacteriorhodopsin in the ground and K states after green laser irradiation
Descriptor: 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ...
Authors:Taguchi, S, Niwa, S, Takeda, K.
Deposit date:2022-04-16
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin
Commun Biol, 6, 2023
7XJE
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BU of 7xje by Molmil
Crystal structure of bacteriorhodopsin in the K state refined against the extrapolated dataset
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL
Authors:Taguchi, S, Niwa, S, Takeda, K.
Deposit date:2022-04-16
Release date:2023-03-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin
Commun Biol, 6, 2023
7XJD
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BU of 7xjd by Molmil
Crystal structure of bacteriorhodopsin in the ground state by red laser irradiation
Descriptor: 2,10,23-TRIMETHYL-TETRACOSANE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ...
Authors:Taguchi, S, Niwa, S, Takeda, K.
Deposit date:2022-04-16
Release date:2023-03-22
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin.
Commun Biol, 6, 2023
7ZCM
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BU of 7zcm by Molmil
Dark state structure of Sensory Rhodopsin II in complex with HtrII solved by room temperature serial synchrotron crystallography
Descriptor: RETINAL, Sensory rhodopsin II transducer, Sensory rhodopsin-2
Authors:Ortolani, G, Bosman, R, Ostojic, L.
Deposit date:2022-03-28
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Serial synchrotron crystallography structure of the Sensory rhodopsin II transducer complex
To be published
7Z09
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BU of 7z09 by Molmil
Crystal structure of the ground state of bacteriorhodopsin at 1.05 Angstrom resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ...
Authors:Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V.
Deposit date:2022-02-22
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.
Nat.Struct.Mol.Biol., 29, 2022
7Z0A
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BU of 7z0a by Molmil
Crystal structure of the ground state of bacteriorhodopsin at 1.22 Angstrom resolution
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ...
Authors:Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V.
Deposit date:2022-02-22
Release date:2022-05-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.
Nat.Struct.Mol.Biol., 29, 2022

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PDB entries from 2024-09-18

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