9UUU
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-05-08 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.17 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UD9
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, down state | Descriptor: | CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-07 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.11 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UD2
 
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9UD3
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-T236Y mutant from Vibrio cholerae | Descriptor: | CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.8 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UD4
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-T236Y mutant from Vibrio cholerae reduced by NADH | Descriptor: | CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.31 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UD6
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, upper state | Descriptor: | CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (2.65 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UDA
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae reduced by NADH, with bound korormicin A, stable state | Descriptor: | CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (2.61 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UD5
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, with bound korormicin A | Descriptor: | CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UDF
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae reduced by NADH, with bound korormicin A, shifted state | Descriptor: | 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (2.93 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9UDG
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, with bound aurachin D-42 | Descriptor: | 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aurachin D, CALCIUM ION, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-04-06 | Release date: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.18 Å) | Cite: | The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes. Biorxiv, 2025
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9U5G
 
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9LRR
 
 | Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae with bound korormicin A | Descriptor: | 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ... | Authors: | Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M. | Deposit date: | 2025-02-01 | Release date: | 2025-04-23 | Last modified: | 2025-05-21 | Method: | ELECTRON MICROSCOPY (2.68 Å) | Cite: | Structural Elucidation of the Mechanism for Inhibitor Resistance in the Na + -Translocating NADH-Ubiquinone Oxidoreductase from Vibrio cholerae. Biochemistry, 64, 2025
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9I2A
 
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9HI3
 
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9GYU
 
 | Ferredoxin CNF-labelled reduced state | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic | Authors: | Carr, S.B, Wei, J, Vincent, K.A. | Deposit date: | 2024-10-03 | Release date: | 2025-05-28 | Last modified: | 2025-06-11 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes. Chembiochem, 2025
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9GYL
 
 | Ferredoxin Wild-type -Oxidised state | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic, ... | Authors: | Carr, S.B, Wei, J, Vincent, K.A. | Deposit date: | 2024-10-02 | Release date: | 2025-05-28 | Last modified: | 2025-06-11 | Method: | X-RAY DIFFRACTION (1.19 Å) | Cite: | Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes. Chembiochem, 2025
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9GYR
 
 | Ferredoxin CNF labelled, oxidised state | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic | Authors: | Carr, S.B, Wei, J, Vincent, K.A. | Deposit date: | 2024-10-02 | Release date: | 2025-05-28 | Last modified: | 2025-06-11 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes. Chembiochem, 2025
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9GYN
 
 | Ferredoxin Wild-type - Reduced state | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic | Authors: | Carr, S.B, Wei, J, Vincent, K.A. | Deposit date: | 2024-10-02 | Release date: | 2025-05-28 | Last modified: | 2025-06-11 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes. Chembiochem, 2025
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9GYD
 
 | Ferredoxin Wild-type -As-isolated state | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic | Authors: | Carr, S.B, Wei, J, Vincent, K.A. | Deposit date: | 2024-10-01 | Release date: | 2025-05-28 | Last modified: | 2025-06-11 | Method: | X-RAY DIFFRACTION (0.92 Å) | Cite: | Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes. Chembiochem, 2025
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9GRX
 
 | NDH-PSI-LHCI supercomplex from S. oleracea | Descriptor: | (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ... | Authors: | Introini, B, Hahn, A, Kuehlbrandt, W. | Deposit date: | 2024-09-13 | Release date: | 2025-02-12 | Last modified: | 2025-06-25 | Method: | ELECTRON MICROSCOPY (3.19 Å) | Cite: | Cryo-EM structure of the NDH-PSI-LHCI supercomplex from Spinacia oleracea. Nat.Struct.Mol.Biol., 32, 2025
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9CU0
 
 | Azotobacter vinelandii 1:1:1 MoFeP:FeP:FeSII-Complex (C1 symmetry) | Descriptor: | 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ... | Authors: | Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A. | Deposit date: | 2024-07-25 | Release date: | 2025-01-15 | Last modified: | 2025-02-05 | Method: | ELECTRON MICROSCOPY (3.94 Å) | Cite: | Structural basis for the conformational protection of nitrogenase from O 2 . Nature, 637, 2025
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9CU2
 
 | Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (C2 symmetry) | Descriptor: | 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ... | Authors: | Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A. | Deposit date: | 2024-07-25 | Release date: | 2025-01-15 | Last modified: | 2025-02-05 | Method: | ELECTRON MICROSCOPY (2.27 Å) | Cite: | Structural basis for the conformational protection of nitrogenase from O 2 . Nature, 637, 2025
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9CU1
 
 | Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (termini; C1 symmetry) | Descriptor: | 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ... | Authors: | Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A. | Deposit date: | 2024-07-25 | Release date: | 2025-01-15 | Last modified: | 2025-02-05 | Method: | ELECTRON MICROSCOPY (2.83 Å) | Cite: | Structural basis for the conformational protection of nitrogenase from O 2 . Nature, 637, 2025
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8RMG
 
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8RMF
 
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