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9UUU
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BU of 9uuu by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-05-08
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD9
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BU of 9ud9 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, down state
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-07
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.11 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD2
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BU of 9ud2 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrC-T225Y mutant from Vibrio cholerae reduced by NADH
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD3
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BU of 9ud3 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-T236Y mutant from Vibrio cholerae
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD4
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BU of 9ud4 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-T236Y mutant from Vibrio cholerae reduced by NADH
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD6
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BU of 9ud6 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, in the absence of Na+, upper state
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UDA
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BU of 9uda by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae reduced by NADH, with bound korormicin A, stable state
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UD5
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BU of 9ud5 by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, with bound korormicin A
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UDF
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BU of 9udf by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae reduced by NADH, with bound korormicin A, shifted state
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9UDG
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BU of 9udg by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, with bound aurachin D-42
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Aurachin D, CALCIUM ION, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-04-06
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9U5G
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BU of 9u5g by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrC-T225Y mutant from Vibrio cholerae
Descriptor: CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J.
Deposit date:2025-03-21
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:The Na + -pumping mechanism driven by redox reactions in the NADH-quinone oxidoreductase from Vibrio cholerae relies on dynamic conformational changes.
Biorxiv, 2025
9LRR
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BU of 9lrr by Molmil
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase NqrB-G141A mutant from Vibrio cholerae with bound korormicin A
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Ishikawa-Fukuda, M, Kishikawa, J, Kato, T, Murai, M.
Deposit date:2025-02-01
Release date:2025-04-23
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Structural Elucidation of the Mechanism for Inhibitor Resistance in the Na + -Translocating NADH-Ubiquinone Oxidoreductase from Vibrio cholerae.
Biochemistry, 64, 2025
9I2A
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BU of 9i2a by Molmil
FdC of Rhodobacter capsulatus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-4
Authors:Pfister, P, Addison, H.G, Erb, T.J, Rebelein, J.G.
Deposit date:2025-01-20
Release date:2025-06-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Two Key Ferredoxins for Nitrogen Fixation Have Different Specificities and Biophysical Properties.
Chemistry, 2025
9HI3
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BU of 9hi3 by Molmil
C-terminal domain of pectobacterial FusB in complex with spinach ferredoxin 1
Descriptor: FE2/S2 (INORGANIC) CLUSTER, NICKEL (II) ION, POTASSIUM ION, ...
Authors:Wojnowska, M, Bogucka, A.
Deposit date:2024-11-22
Release date:2025-04-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:C-terminal domain of pectobacterial FusB in complex with spinach ferredoxin 1
To Be Published
9GYU
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BU of 9gyu by Molmil
Ferredoxin CNF-labelled reduced state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-03
Release date:2025-05-28
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 2025
9GYL
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BU of 9gyl by Molmil
Ferredoxin Wild-type -Oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic, ...
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 2025
9GYR
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BU of 9gyr by Molmil
Ferredoxin CNF labelled, oxidised state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 2025
9GYN
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BU of 9gyn by Molmil
Ferredoxin Wild-type - Reduced state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-02
Release date:2025-05-28
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (1 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 2025
9GYD
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BU of 9gyd by Molmil
Ferredoxin Wild-type -As-isolated state
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin-1, chloroplastic
Authors:Carr, S.B, Wei, J, Vincent, K.A.
Deposit date:2024-10-01
Release date:2025-05-28
Last modified:2025-06-11
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.
Chembiochem, 2025
9GRX
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BU of 9grx by Molmil
NDH-PSI-LHCI supercomplex from S. oleracea
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Introini, B, Hahn, A, Kuehlbrandt, W.
Deposit date:2024-09-13
Release date:2025-02-12
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Cryo-EM structure of the NDH-PSI-LHCI supercomplex from Spinacia oleracea.
Nat.Struct.Mol.Biol., 32, 2025
9CU0
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BU of 9cu0 by Molmil
Azotobacter vinelandii 1:1:1 MoFeP:FeP:FeSII-Complex (C1 symmetry)
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
Authors:Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A.
Deposit date:2024-07-25
Release date:2025-01-15
Last modified:2025-02-05
Method:ELECTRON MICROSCOPY (3.94 Å)
Cite:Structural basis for the conformational protection of nitrogenase from O 2 .
Nature, 637, 2025
9CU2
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BU of 9cu2 by Molmil
Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (C2 symmetry)
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
Authors:Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A.
Deposit date:2024-07-25
Release date:2025-01-15
Last modified:2025-02-05
Method:ELECTRON MICROSCOPY (2.27 Å)
Cite:Structural basis for the conformational protection of nitrogenase from O 2 .
Nature, 637, 2025
9CU1
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BU of 9cu1 by Molmil
Azotobacter vinelandii filamentous 2:2:1 MoFeP:FeP:FeSII-Complex (termini; C1 symmetry)
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, ADENOSINE-5'-DIPHOSPHATE, FE (III) ION, ...
Authors:Narehood, S.M, Cook, B.D, Srisantitham, S, Eng, V.H, Shiau, A, Britt, R.D, Herzik, M.A, Tezcan, F.A.
Deposit date:2024-07-25
Release date:2025-01-15
Last modified:2025-02-05
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structural basis for the conformational protection of nitrogenase from O 2 .
Nature, 637, 2025
8RMG
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BU of 8rmg by Molmil
Structure of the core ISC complex under turnover conditions (FDX2-bound in distal conformation)
Descriptor: Acyl carrier protein, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Steinhilper, R, Murphy, B.J.
Deposit date:2024-01-05
Release date:2024-12-18
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Two-stage binding of mitochondrial ferredoxin-2 to the core iron-sulfur cluster assembly complex.
Nat Commun, 15, 2024
8RMF
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BU of 8rmf by Molmil
Structure of the core ISC complex under turnover conditions (FDX2-bound in proximal conformation)
Descriptor: Acyl carrier protein, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Steinhilper, R, Murphy, B.J.
Deposit date:2024-01-05
Release date:2024-12-18
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Two-stage binding of mitochondrial ferredoxin-2 to the core iron-sulfur cluster assembly complex.
Nat Commun, 15, 2024

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PDB entries from 2025-07-09

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