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7F3J
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7F3I
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Descriptor: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
3ULJ
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BU of 3ulj by Molmil
Crystal structure of apo Lin28B cold shock domain
Descriptor: ACETATE ION, GLYCEROL, Lin28b, ...
Authors:Mayr, F, Schuetz, A, Doege, N, Heinemann, U.
Deposit date:2011-11-10
Release date:2012-08-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:The Lin28 cold-shock domain remodels pre-let-7 microRNA.
Nucleic Acids Res., 40, 2012
4ALP
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BU of 4alp by Molmil
The Lin28b Cold shock domain in complex with hexauridine
Descriptor: GLYCEROL, HEXA URIDINE, LIN28 ISOFORM B
Authors:Mayr, F, Schuetz, A, Doege, N, Heinemann, U.
Deposit date:2012-03-05
Release date:2012-09-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna.
Nucleic Acids Res., 40, 2012
6KTC
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BU of 6ktc by Molmil
Crystal structure of YBX1 CSD with m5C RNA
Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*GP*(5MC)P*CP*U)-3')
Authors:Zou, F, Li, S.
Deposit date:2019-08-27
Release date:2020-02-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:DrosophilaYBX1 homolog YPS promotes ovarian germ line stem cell development by preferentially recognizing 5-methylcytosine RNAs.
Proc.Natl.Acad.Sci.USA, 117, 2020
4A4I
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Crystal structure of the human Lin28b cold shock domain
Descriptor: GLYCEROL, PROTEIN LIN-28 HOMOLOG B, SULFATE ION
Authors:Mayr, F, Schuetz, A, Doege, N, Heinemann, U.
Deposit date:2011-10-14
Release date:2012-08-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna.
Nucleic Acids Res., 40, 2012
4A75
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The Lin28b Cold shock domain in complex with hexathymidine.
Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP)-3', LIN28 COLD SHOCK DOMAIN, THIOCYANATE ION
Authors:Mayr, F, Schuetz, A, Doege, N, Heinemann, U.
Deposit date:2011-11-11
Release date:2012-09-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna.
Nucleic Acids Res., 40, 2012
6KUG
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BU of 6kug by Molmil
Crystal structure of YBX1 CSD with RNA
Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*GP*CP*CP*U)-3')
Authors:Zou, F, Li, S.
Deposit date:2019-09-02
Release date:2020-02-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:DrosophilaYBX1 homolog YPS promotes ovarian germ line stem cell development by preferentially recognizing 5-methylcytosine RNAs.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LMS
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BU of 6lms by Molmil
Solution NMR structure cold shock domain of YB1 from Homo sapiens
Descriptor: Y-box-binding protein 1
Authors:Li, S, Zhang, J, Yang, Y.
Deposit date:2019-12-26
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.
Nucleic Acids Res., 48, 2020
4A76
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The Lin28b Cold shock domain in complex with heptathymidine
Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP*TP)-3', LIN28 COLD SHOCK DOMAIN
Authors:Mayr, F, Schuetz, A, Doege, N, Heinemann, U.
Deposit date:2011-11-11
Release date:2012-09-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The Lin28 Cold-Shock Domain Remodels Pre-Let-7 Microrna.
Nucleic Acids Res., 40, 2012
6LMR
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BU of 6lmr by Molmil
Solution structure of cold shock domain and ssDNA complex
Descriptor: DNA (5'-D(P*AP*AP*CP*AP*CP*CP*T)-3'), Y-box-binding protein 1
Authors:Fan, J, Yang, D.
Deposit date:2019-12-26
Release date:2020-07-22
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation.
Nucleic Acids Res., 48, 2020
1G6P
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BU of 1g6p by Molmil
SOLUTION NMR STRUCTURE OF THE COLD SHOCK PROTEIN FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA
Descriptor: COLD SHOCK PROTEIN TMCSP
Authors:Kremer, W, Schuler, B, Harrieder, S, Geyer, M, Gronwald, W, Welker, C, Jaenicke, R, Kalbitzer, H.R.
Deposit date:2000-11-07
Release date:2001-11-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution NMR structure of the cold-shock protein from the hyperthermophilic bacterium Thermotoga maritima.
Eur.J.Biochem., 268, 2001
1H95
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BU of 1h95 by Molmil
Solution structure of the single-stranded DNA-binding Cold Shock Domain (CSD) of human Y-box protein 1 (YB1) determined by NMR (10 lowest energy structures)
Descriptor: Y-BOX BINDING PROTEIN
Authors:Kloks, C.P.A.M, Spronk, C.A.E.M, Hoffmann, A, Vuister, G.W, Grzesiek, S, Hilbers, C.W.
Deposit date:2001-02-23
Release date:2002-02-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Solution Structure and DNA-Binding Properties of the Cold-Shock Domain of the Human Y-Box Protein Yb-1.
J.Mol.Biol., 316, 2002
1HZ9
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BU of 1hz9 by Molmil
BACILLUS CALDOLYTICUS COLD-SHOCK PROTEIN MUTANTS TO STUDY DETERMINANTS OF PROTEIN STABILITY
Descriptor: COLD SHOCK PROTEIN CSPB
Authors:Delbrueck, H, Mueller, U, Perl, D, Schmid, F.X, Heinemann, U.
Deposit date:2001-01-24
Release date:2001-11-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
J.Mol.Biol., 313, 2001
1HZA
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BU of 1hza by Molmil
BACILLUS CALDOLYTICUS COLD-SHOCK PROTEIN MUTANTS TO STUDY DETERMINANTS OF PROTEIN STABILITY
Descriptor: COLD SHOCK PROTEIN CSPB
Authors:Delbrueck, H, Mueller, U, Perl, D, Schmid, F.X, Heinemann, U.
Deposit date:2001-01-24
Release date:2001-11-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
J.Mol.Biol., 313, 2001
1HZB
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BU of 1hzb by Molmil
BACILLUS CALDOLYTICUS COLD-SHOCK PROTEIN MUTANTS TO STUDY DETERMINANTS OF PROTEIN STABILITY
Descriptor: COLD SHOCK PROTEIN CSPB, SODIUM ION
Authors:Delbrueck, H, Mueller, U, Perl, D, Schmid, F.X, Heinemann, U.
Deposit date:2001-01-24
Release date:2001-11-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
J.Mol.Biol., 313, 2001
1HZC
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BU of 1hzc by Molmil
BACILLUS CALDOLYTICUS COLD-SHOCK PROTEIN MUTANTS TO STUDY DETERMINANTS OF PROTEIN STABILITY
Descriptor: COLD SHOCK PROTEIN CSPB, SODIUM ION
Authors:Delbrueck, H, Mueller, U, Perl, D, Schmid, F.X, Heinemann, U.
Deposit date:2001-01-24
Release date:2001-11-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
J.Mol.Biol., 313, 2001
2YTX
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BU of 2ytx by Molmil
Solution structure of the second cold-shock domain of the human KIAA0885 protein (UNR protein)
Descriptor: Cold shock domain-containing protein E1
Authors:Goroncy, A.K, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
J.Struct.Funct.Genom., 11, 2010
2YTV
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BU of 2ytv by Molmil
Solution structure of the fifth cold-shock domain of the human KIAA0885 protein (unr protein)
Descriptor: Cold shock domain-containing protein E1
Authors:Goroncy, A.K, Tochio, N, Tomizawa, T, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
J.Struct.Funct.Genom., 11, 2010
2LXJ
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BU of 2lxj by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for cold shock protein, LmCsp with dT7
Descriptor: Cold shock-like protein CspLA
Authors:Lee, J, Jeong, K, Kim, Y.
Deposit date:2012-08-27
Release date:2013-08-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Dynamic Features of Cold-Shock Proteins of Listeriamonocytogenes, a Psychrophilic Bacterium
Biochemistry, 52, 2013
2LXK
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BU of 2lxk by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for cold shock protein, LmCsp
Descriptor: Cold shock-like protein CspLA
Authors:Lee, J, Jeong, K, Kim, Y.
Deposit date:2012-08-27
Release date:2013-08-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Dynamic Features of Cold-Shock Proteins of Listeriamonocytogenes, a Psychrophilic Bacterium
Biochemistry, 52, 2013
3A0J
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BU of 3a0j by Molmil
Crystal structure of cold shock protein 1 from Thermus thermophilus HB8
Descriptor: Cold shock protein
Authors:Miyazaki, T, Nakagawa, N, Kuramitsu, S, Masui, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-03-19
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Biological Action of Cold Shock Protein 1 from Thermus thermophilus HB8
To be Published
1I5F
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BU of 1i5f by Molmil
BACILLUS CALDOLYTICUS COLD-SHOCK PROTEIN MUTANTS TO STUDY DETERMINANTS OF PROTEIN STABILITY
Descriptor: COLD-SHOCK PROTEIN CSPB, SODIUM ION
Authors:Delbrueck, H, Mueller, U, Perl, D, Schmid, F.X, Heinemann, U.
Deposit date:2001-02-27
Release date:2001-11-07
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structures of mutant forms of the Bacillus caldolyticus cold shock protein differing in thermal stability.
J.Mol.Biol., 313, 2001
2N49
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BU of 2n49 by Molmil
EC-NMR Structure of Erwinia carotovora ECA1580 N-terminal Domain Determined by Combining Evolutionary Couplings (EC) and Sparse NMR Data. Northeast Structural Genomics Consortium target EwR156A
Descriptor: Putative cold-shock protein
Authors:Tang, Y, Huang, Y.J, Hopf, T.A, Sander, C, Marks, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2015-06-17
Release date:2015-07-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Protein structure determination by combining sparse NMR data with evolutionary couplings.
Nat.Methods, 12, 2015

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