Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6SZK
DownloadVisualize
BU of 6szk by Molmil
Hydrogenase-2 variant R479K - hydrogen reduced form treated with CO
分子名称: CARBON MONOXIDE, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ...
著者Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
登録日2019-10-02
公開日2020-10-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine.
To Be Published
6SYX
DownloadVisualize
BU of 6syx by Molmil
Hydrogenase-2 variant R479K - reduced sample exposed to pure oxygen
分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
登録日2019-10-01
公開日2020-10-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine.
To Be Published
6SZD
DownloadVisualize
BU of 6szd by Molmil
Hydrogenase-2 variant R479K - hydrogen reduced form
分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
登録日2019-10-02
公開日2020-10-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine.
To Be Published
6EHQ
DownloadVisualize
BU of 6ehq by Molmil
E. coli Hydrogenase-2 (as isolated form).
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2 large chain, ...
著者Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
登録日2017-09-14
公開日2018-04-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of hydrogenase-2 fromEscherichia coli: implications for H2-driven proton pumping.
Biochem. J., 475, 2018
4UPE
DownloadVisualize
BU of 4upe by Molmil
Structure of the unready Ni-A state of the S499C mutant of D. fructosovorans NiFe-hydrogenase
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, ...
著者Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C.
登録日2014-06-16
公開日2014-10-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.
J. Biol. Inorg. Chem., 20, 2015
6I1P
DownloadVisualize
BU of 6i1p by Molmil
Respiratory complex I from Thermus thermophilus with bound NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
著者Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A.
登録日2018-10-29
公開日2020-09-02
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.207 Å)
主引用文献Key role of quinone in the mechanism of respiratory complex I.
Nat Commun, 11, 2020
4URH
DownloadVisualize
BU of 4urh by Molmil
High-resolution structure of partially oxidized D. fructosovorans NiFe-hydrogenase
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ...
著者Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C.
登録日2014-06-30
公開日2014-10-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.
J. Biol. Inorg. Chem., 20, 2015
7ODH
DownloadVisualize
BU of 7odh by Molmil
Crystal structure of the O2-tolerant MBH-P242C from Ralstonia eutropha in its as-isolated state
分子名称: CHLORIDE ION, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Schmidt, A, Kalms, J, Scheerer, P.
登録日2021-04-29
公開日2021-07-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Resonance Raman spectroscopic analysis of the iron-sulfur cluster redox chain of the Ralstonia eutropha membrane-bound [NiFe]-hydrogenase
J Raman Spectrosc, 2021
1H2A
DownloadVisualize
BU of 1h2a by Molmil
SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
分子名称: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
著者Higuchi, Y, Yasuoka, N.
登録日1997-10-17
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
5D51
DownloadVisualize
BU of 5d51 by Molmil
Krypton derivatization of an O2-tolerant membrane-bound [NiFe] hydrogenase reveals a hydrophobic gas tunnel network
分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
著者Kalms, J, Schmidt, A, Frielingsdorf, S, van der Linden, P, von Stetten, D, Lenz, O, Carpentier, P, Scheerer, P.
登録日2015-08-10
公開日2016-03-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Krypton Derivatization of an O2 -Tolerant Membrane-Bound [NiFe] Hydrogenase Reveals a Hydrophobic Tunnel Network for Gas Transport.
Angew.Chem.Int.Ed.Engl., 55, 2016
3M9S
DownloadVisualize
BU of 3m9s by Molmil
Crystal structure of respiratory complex I from Thermus thermophilus
分子名称: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
著者Efremov, R.G, Baradaran, R, Sazanov, L.A.
登録日2010-03-22
公開日2010-05-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献The architecture of respiratory complex I
Nature, 465, 2010
8W6X
DownloadVisualize
BU of 8w6x by Molmil
Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Hiromoto, T, Tamada, T.
登録日2023-08-30
公開日2023-09-13
最終更新日2023-11-15
実験手法NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION
主引用文献New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase.
Chem Sci, 14, 2023
1CC1
DownloadVisualize
BU of 1cc1 by Molmil
CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROGENASE (LARGE SUBUNIT), ...
著者Garcin, E, Vernede, X, Hatchikian, E.C, Volbeda, A, Frey, M, Fontecilla-Camps, J.C.
登録日1999-03-03
公開日1999-06-01
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center
Structure Fold.Des., 7, 1999
2WPN
DownloadVisualize
BU of 2wpn by Molmil
Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough
分子名称: 3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), CARBONMONOXIDE-(DICYANO) IRON, ...
著者Marques, M.C, Coelho, R, De Lacey, A.L, Pereira, I.A.C, Matias, P.M.
登録日2009-08-07
公開日2010-01-12
最終更新日2019-07-10
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state.
J.Mol.Biol., 396, 2010
7NEM
DownloadVisualize
BU of 7nem by Molmil
Hydrogenase-2 variant R479K - anaerobically oxidised form
分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
著者Carr, S.B.
登録日2021-02-04
公開日2022-03-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A comprehensive structural and kinetic investigation of the role of the active-site argininein bidirectional hydrogen activation by the [NiFe]-hydrogenase "Hyd-2) from Escherichia coli
To Be Published
4OMF
DownloadVisualize
BU of 4omf by Molmil
The F420-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member
分子名称: CHLORIDE ION, F420-reducing hydrogenase, subunit alpha, ...
著者Vitt, S, Ma, K, Warkentin, E, Moll, J, Pierik, A, Shima, S, Ermler, U.
登録日2014-01-27
公開日2014-06-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member.
J.Mol.Biol., 426, 2014
5GUP
DownloadVisualize
BU of 5gup by Molmil
Cryo-EM structure of mammalian respiratory supercomplex I1III2IV1
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Guo, R, Yang, M.
登録日2016-08-30
公開日2017-03-29
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure of Mammalian Respiratory Supercomplex I1III2IV1
Cell, 167, 2016
7AK5
DownloadVisualize
BU of 7ak5 by Molmil
Cryo-EM structure of respiratory complex I in the deactive state from Mus musculus at 3.2 A
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Yin, Z, Bridges, H.R, Grba, D, Hirst, J.
登録日2020-09-29
公開日2021-02-03
最終更新日2021-02-10
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Structural basis for a complex I mutation that blocks pathological ROS production.
Nat Commun, 12, 2021
5GPN
DownloadVisualize
BU of 5gpn by Molmil
Architecture of mammalian respirasome
分子名称: Acyl carrier protein, COPPER (II) ION, Cytochrome b, ...
著者Gu, J, Wu, M, Guo, R, Yang, M.
登録日2016-08-03
公開日2017-04-05
最終更新日2017-04-12
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献The architecture of the mammalian respirasome.
Nature, 537, 2016
5XFA
DownloadVisualize
BU of 5xfa by Molmil
Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the H2-reduced state
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ...
著者Shomura, Y, Taketa, M, Nakashima, H, Tai, H, Nakagawa, H, Ikeda, Y, Ishii, M, Igarashi, Y, Nishihara, H, Yoon, K.S, Ogo, S, Hirota, S, Higuchi, Y.
登録日2017-04-09
公開日2017-08-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
7B0N
DownloadVisualize
BU of 7b0n by Molmil
A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM.
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, CARDIOLIPIN, ...
著者Hirst, J, Grba, D.
登録日2020-11-20
公開日2021-03-10
最終更新日2022-12-07
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I.
J.Biol.Chem., 296, 2021
7F9O
DownloadVisualize
BU of 7f9o by Molmil
PSI-NDH supercomplex of Barley
分子名称: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
著者Wang, W.D, Shen, L, Tang, K, Han, G.Y, Shen, J.R, Zhang, X.
登録日2021-07-04
公開日2021-12-22
最終更新日2022-02-09
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.
Nature, 601, 2022
7EU3
DownloadVisualize
BU of 7eu3 by Molmil
Chloroplast NDH complex
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, BETA-CAROTENE, ...
著者Wang, W.D, Shen, L, Tang, K, Han, G.Y, Zhang, X, Shen, J.R.
登録日2021-05-15
公開日2021-12-29
最終更新日2022-02-09
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Architecture of the chloroplast PSI-NDH supercomplex in Hordeum vulgare.
Nature, 601, 2022
5XTH
DownloadVisualize
BU of 5xth by Molmil
Cryo-EM structure of human respiratory supercomplex I1III2IV1
分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ...
著者Gu, J, Wu, M, Yang, M.
登録日2017-06-19
公開日2017-09-13
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of Human Mitochondrial Respiratory Megacomplex I2III2IV2.
Cell, 170, 2017
8ESW
DownloadVisualize
BU of 8esw by Molmil
Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ...
著者Padavannil, A, Letts, J.A.
登録日2022-10-15
公開日2023-03-29
最終更新日2023-04-05
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Resting mitochondrial complex I from Drosophila melanogaster adopts a helix-locked state.
Elife, 12, 2023

225158

件を2024-09-18に公開中

PDB statisticsPDBj update infoContact PDBjnumon