Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8QQK
DownloadVisualize
BU of 8qqk by Molmil
Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1,2-Distearoyl-sn-glycerophosphoethanolamine, COPPER (II) ION, ...
著者Gao, Y, Zhang, Y, Hakke, S, Peters, P.J, Ravelli, R.B.G.
登録日2023-10-05
公開日2024-04-24
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structure of cytochrome bo 3 quinol oxidase assembled in peptidiscs reveals an "open" conformation for potential ubiquinone-8 release.
Biochim Biophys Acta Bioenerg, 1865, 2024
8C8Q
DownloadVisualize
BU of 8c8q by Molmil
Cytochrome c oxidase from Schizosaccharomyces pombe
分子名称: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase polypeptide 5, ...
著者Moe, A, Adelroth, P, Brzezinski, P, Nasvik Ojemyr, L.
登録日2023-01-20
公開日2023-03-01
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Cryo-EM structure and function of S. pombe complex IV with bound respiratory supercomplex factor.
Commun Chem, 6, 2023
7EV7
DownloadVisualize
BU of 7ev7 by Molmil
Bovine heart cytochrome c oxidase in the carbon monoxide-bound fully reduced state at a 50 K
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Shimada, A, Yoshikawa, S, Tsukihara, T.
登録日2021-05-20
公開日2021-07-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of CO-bound fully reduced state of bovine heart cytochrome c oxidase
To Be Published
6CI0
DownloadVisualize
BU of 6ci0 by Molmil
Catalytic core subunits (I and II) of cytochrome C oxidase from Rhodobacter sphaeroides with E101A (II) mutation
分子名称: (2S,3R)-heptane-1,2,3-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, ...
著者Liu, J, Hiser, C, Ferguson-Miller, S.
登録日2018-02-23
公開日2018-04-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The K-path entrance in cytochrome c oxidase is defined by mutation of E101 and controlled by an adjacent ligand binding domain.
Biochim. Biophys. Acta, 1859, 2018
3HB3
DownloadVisualize
BU of 3hb3 by Molmil
High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase
分子名称: ANTIBODY FV FRAGMENT, CALCIUM ION, COPPER (I) ION, ...
著者Koepke, J, Angerer, H, Peng, G.
登録日2009-05-04
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: New insights into the active site and the proton transfer pathways
Biochim.Biophys.Acta, 1787, 2009
1AR1
DownloadVisualize
BU of 1ar1 by Molmil
Structure at 2.7 Angstrom Resolution of the Paracoccus Denitrificans two-subunit Cytochrome C Oxidase Complexed with an Antibody Fv Fragment
分子名称: ANTIBODY FV FRAGMENT, CALCIUM ION, COPPER (II) ION, ...
著者Ostermeier, C, Harrenga, A, Ermler, U, Michel, H.
登録日1997-08-08
公開日1998-02-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure at 2.7 A resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment.
Proc.Natl.Acad.Sci.USA, 94, 1997
3MK7
DownloadVisualize
BU of 3mk7 by Molmil
The structure of CBB3 cytochrome oxidase
分子名称: 30-mer peptide, CALCIUM ION, COPPER (II) ION, ...
著者Buschmann, S, Warkentin, E, Michel, H, Ermler, U.
登録日2010-04-14
公開日2010-08-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping
Science, 329, 2010
5NDC
DownloadVisualize
BU of 5ndc by Molmil
Structure of ba3-type cytochrome c oxidase from Thermus thermophilus by serial femtosecond crystallography
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide IIA, ...
著者Andersson, R, Safari, C, Dods, R, Nango, E, Tanaka, R, Nakane, T, Tono, K, Joti, Y, Bath, P, Dunevall, E, Bosman, E, Nureki, O, Iwata, S, Neutze, R, Branden, G.
登録日2017-03-08
公開日2017-08-23
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature.
Sci Rep, 7, 2017
5DJQ
DownloadVisualize
BU of 5djq by Molmil
The structure of CBB3 cytochrome oxidase.
分子名称: CALCIUM ION, COPPER (II) ION, Cbb3-type cytochrome c oxidase subunit CcoN1, ...
著者Buschmann, S, Warkentin, E, Xie, H, Kohlstaedt, M, Langer, J.D, Ermler, U, Michel, H.
登録日2015-09-02
公開日2016-01-13
最終更新日2016-07-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The structure of cbb3 cytochrome oxidase provides insights into proton pumping.
Science, 329, 2010
2OCC
DownloadVisualize
BU of 2occ by Molmil
BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
分子名称: COPPER (II) ION, CYTOCHROME C OXIDASE, HEME-A, ...
著者Tsukihara, T, Yao, M.
登録日1998-05-26
公開日1999-01-13
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Redox-coupled crystal structural changes in bovine heart cytochrome c oxidase.
Science, 280, 1998
7N9Z
DownloadVisualize
BU of 7n9z by Molmil
E. coli cytochrome bo3 in MSP nanodisc
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
著者Vallese, F, Clarke, O.B.
登録日2021-06-19
公開日2021-09-01
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.19 Å)
主引用文献Cryo-EM structures of Escherichia coli cytochrome bo 3 reveal bound phospholipids and ubiquinone-8 in a dynamic substrate binding site.
Proc.Natl.Acad.Sci.USA, 118, 2021
1XME
DownloadVisualize
BU of 1xme by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase from Thermus thermophilus
分子名称: COPPER (II) ION, Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, ...
著者Hunsicker-Wang, L.M, Pacoma, R.L, Chen, Y, Fee, J.A, Stout, C.D.
登録日2004-10-01
公開日2005-03-22
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus.
Acta Crystallogr.,Sect.D, 61, 2005
4N4Y
DownloadVisualize
BU of 4n4y by Molmil
Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, ...
著者Li, Y, Chen, Y, Stout, C.D.
登録日2013-10-08
公開日2014-10-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of Recombinant Cytochrome ba3 Oxidase mutant G232V from Thermus thermophilus
To be Published
2GSM
DownloadVisualize
BU of 2gsm by Molmil
Catalytic Core (Subunits I and II) of Cytochrome c oxidase from Rhodobacter sphaeroides
分子名称: CADMIUM ION, CALCIUM ION, COPPER (II) ION, ...
著者Qin, L, Hiser, C, Mulichak, A, Garavito, R.M, Ferguson-Miller, S.
登録日2006-04-26
公開日2006-10-10
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.
Proc.Natl.Acad.Sci.Usa, 103, 2006
6YMY
DownloadVisualize
BU of 6ymy by Molmil
Cytochrome c oxidase from Saccharomyces cerevisiae
分子名称: (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate, 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, COPPER (II) ION, ...
著者Berndtsson, J, Rathore, S, Ott, M.
登録日2020-04-10
公開日2020-09-09
最終更新日2021-03-24
実験手法ELECTRON MICROSCOPY (3.41 Å)
主引用文献Respiratory supercomplexes enhance electron transport by decreasing cytochrome c diffusion distance.
Embo Rep., 21, 2020
3S33
DownloadVisualize
BU of 3s33 by Molmil
Structure of Thermus thermophilus cytochrome ba3 oxidase 10s after Xe depressurization
分子名称: COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ...
著者Luna, V.M, Fee, J.A, Deniz, A.A, Stout, C.D.
登録日2011-05-17
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (4.45 Å)
主引用文献Mobility of Xe atoms within the oxygen diffusion channel of cytochrome ba(3) oxidase.
Biochemistry, 51, 2012
3S3C
DownloadVisualize
BU of 3s3c by Molmil
Structure of Thermus thermophilus cytochrome ba3 oxidase 360s after Xe depressurization
分子名称: COPPER (II) ION, Cytochrome c oxidase polypeptide 2A, Cytochrome c oxidase subunit 1, ...
著者Luna, V.M, Fee, J.A, Deniz, A.A, Stout, C.D.
登録日2011-05-18
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Mobility of Xe atoms within the oxygen diffusion channel of cytochrome ba(3) oxidase.
Biochemistry, 51, 2012
6PW1
DownloadVisualize
BU of 6pw1 by Molmil
Cytochrome c Oxidase delta 16
分子名称: (2S,3R)-heptane-1,2,3-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, ...
著者Liu, J, Ferguson-Miller, S.
登録日2019-07-21
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural changes at the surface of cytochrome c oxidase alter the proton-pumping stoichiometry.
Biochim Biophys Acta Bioenerg, 1861, 2019
6PW0
DownloadVisualize
BU of 6pw0 by Molmil
Cytochrome C oxidase delta 6 mutant
分子名称: (2S,3R)-heptane-1,2,3-triol, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, ...
著者Liu, J, Ferguson-Miller, S.
登録日2019-07-21
公開日2019-11-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural changes at the surface of cytochrome c oxidase alter the proton-pumping stoichiometry.
Biochim Biophys Acta Bioenerg, 1861, 2019
8D4T
DownloadVisualize
BU of 8d4t by Molmil
Mammalian CIV with GDN bound
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, ...
著者Di Trani, J, Rubinstein, J.
登録日2022-06-02
公開日2022-07-06
最終更新日2022-08-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis of mammalian complex IV inhibition by steroids.
Proc.Natl.Acad.Sci.USA, 119, 2022
8DH6
DownloadVisualize
BU of 8dh6 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
分子名称: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase subunit 1, ...
著者Godoy, A.S, Song, Y, Cheruvara, H, Quigley, A, Oliva, G.
登録日2022-06-25
公開日2022-07-20
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.94 Å)
主引用文献Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
To Be Published
1FFT
DownloadVisualize
BU of 1fft by Molmil
The structure of ubiquinol oxidase from Escherichia coli
分子名称: COPPER (II) ION, HEME O, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Abramson, J, Riistama, S, Larsson, G, Jasaitis, A, Svensson-Ek, M, Puustinen, A, Iwata, S, Wikstrom, M.
登録日2000-07-26
公開日2000-10-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site.
Nat.Struct.Biol., 7, 2000
1EHK
DownloadVisualize
BU of 1ehk by Molmil
CRYSTAL STRUCTURE OF THE ABERRANT BA3-CYTOCHROME-C OXIDASE FROM THERMUS THERMOPHILUS
分子名称: BA3-TYPE CYTOCHROME-C OXIDASE, COPPER (II) ION, DINUCLEAR COPPER ION, ...
著者Soulimane, T, Buse, G, Bourenkov, G.P, Bartunik, H.D, Huber, R, Than, M.E.
登録日2000-02-21
公開日2001-02-22
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure and mechanism of the aberrant ba(3)-cytochrome c oxidase from thermus thermophilus.
EMBO J., 19, 2000
1V55
DownloadVisualize
BU of 1v55 by Molmil
Bovine heart cytochrome c oxidase at the fully reduced state
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S.
登録日2003-11-21
公開日2003-12-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1V54
DownloadVisualize
BU of 1v54 by Molmil
Bovine heart cytochrome c oxidase at the fully oxidized state
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S.
登録日2003-11-21
公開日2003-12-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003

225158

件を2024-09-18に公開中

PDB statisticsPDBj update infoContact PDBjnumon