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9YDK

Dickerson dodecamer RNA duplex containing a modified base with a 2-F-6-aminopurine/G mismatch.

This is a non-PDB format compatible entry.
Resources
File formatFile name (file size)
PDBx/mmCIF9ydk.cif.gz Display(36.01 KB)
9ydk.cif
PDBx/mmJSONall9ydk.json.gz Display (Tree)(27.03 KB)
9ydk.json
no-atom9ydk-noatom.json.gz Display (Header)(11.70 KB)
9ydk-noatom.json
add only9ydk-plus.json.gz Display(157.00 B)
9ydk-plus.json
PDBMLall9ydk.xml.gz Display(42.32 KB)
9ydk.xml
no-atom9ydk-noatom.xml.gz Display(15.47 KB)
9ydk-noatom.xml
ext-atom9ydk-extatom.xml.gz Display(13.25 KB)
9ydk-extatom.xml
pdb_nextgenallpdb_00009ydk_xyz-enrich.cif.gz Display(36.42 KB)
pdb_00009ydk_xyz-enrich.cif
no-atompdb_00009ydk_xyz-no-atom-enrich.xml.gz Display(15.49 KB)
pdb_00009ydk_xyz-no-atom-enrich.xml
ng-only9ydk-plus.json.gz Display(36.00 B)
9ydk-plus.json
RDF9ydk.rdf.gz Visualize(34.72 KB)
9ydk.rdf
Structure factorsr9ydksf.ent.gz Display(665.17 KB)
r9ydksf.ent
Biological unit (mmCIF format)9ydk-assembly1.cif.gz Display(37.62 KB)
9ydk-assembly1.cif (A)

*author and software defined assembly, 2 molecule(s) (dimeric)

Validation reportsPDF9ydk_validation.pdf.gz Display(385.83 KB)
9ydk_validation.pdf
PDF-full9ydk_full_validation.pdf.gz Display(385.78 KB)
9ydk_full_validation.pdf
mmCIF9ydk_validation.cif.gz Display(5.92 KB)
9ydk_validation.cif
XML9ydk_validation.xml.gz Display(4.40 KB)
9ydk_validation.xml
PNG9ydk_multipercentile_validation.png.gz Display(131.69 KB)
9ydk_multipercentile_validation.png
SVG9ydk_multipercentile_validation.svg.gz Display(884.00 B)
9ydk_multipercentile_validation.svg
EDMap2fo-fc (PDBx/mmCIF)9ydk_validation_2fo-fc_map_coef.cif.gz Display(194.14 KB)
9ydk_validation_2fo-fc_map_coef.cif
fo-fc (PDBx/mmCIF)9ydk_validation_fo-fc_map_coef.cif.gz Display(193.49 KB)
9ydk_validation_fo-fc_map_coef.cif
2fo-fc (MTZ)9ydk_validation_2fo-fc_map_coef.mtz Visualize(312.05 KB)
fo-fc (MTZ)9ydk_validation_fo-fc_map_coef.mtz Visualize(312.05 KB)

258222

PDB entries from 2026-08-19

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