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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9ZNG

Cryo-EM structure of the Methanosarcina acetivorans 70S ribosome in complex with SriD

This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrqkqefrrp.DGlhvsFedNamVI
ChainResidueDetails
AHALA71-ILE97
site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. KTnrkVvsHprrRHWRR
ChainResidueDetails
AaLYS29-ARG45
site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GalIVTTSsGVMsqyeAR
ChainResidueDetails
BIGLY100-ARG117
site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrAFarA.GIrIgrieDvTPvPHD
ChainResidueDetails
BMILE94-IAS116
site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
BNLYS58-ARG65
site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtIaEcRPIS
ChainResidueDetails
BRGLY83-SER95
site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKgfvsvdLqpemVGhrFGEFapT
ChainResidueDetails
BTASN89-THR113
site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LrnITGQevVrCfAKrT
ChainResidueDetails
ADLEU29-THR45
site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGiiGQanAvrtAvARGI
ChainResidueDetails
BJGLY69-ILE87
site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AertGVnisGPVpLPT
ChainResidueDetails
BLALA27-THR42
site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LrkHLsvnKkDvhNkrsLnlTeskirrLvkY
ChainResidueDetails
BQLEU98-TYR128
site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FkngtlvDtaAiTiGKGtqGpvkR
ChainResidueDetails
ABPHE193-ARG216
site_idPS00475
Number of Residues31
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGaGlLdhp..VtIaaltFSdsAfekIteaG
ChainResidueDetails
AMLYS73-GLY103
AILYS103-GLY133
site_idPS00527
Number of Residues22
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgrkqglvrkyd.IYLCRhCFR
ChainResidueDetails
BPARG17-ARG38
site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HqKRLSvPksWkVgK
ChainResidueDetails
BEHIS3-LYS17
site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. YGmqESkGYAkVYADearmkqvE
ChainResidueDetails
BWTYR59-GLU81
site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGcDgsGfVM
ChainResidueDetails
BGILE52-MET63
site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. NPGRIGeIRRTIARI
ChainResidueDetails
AUASN43-ILE57
site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FkRtcshKfkRLddn..WRRprG
ChainResidueDetails
AYPHE22-GLY42
site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrvkFrAtvIVGNrn.GyVGlGqakdv.QVgp.AI
ChainResidueDetails
BFGLY65-ILE97
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVLRlglArTviqARqFI
ChainResidueDetails
BDLEU109-ILE133
site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. TMkmLrLhKvnHcVfvpenphykgMVqkVkdYV
ChainResidueDetails
AVTHR20-VAL52
site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHerGlkVRGQ
ChainResidueDetails
BOARG131-GLN144
site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QktkIkrFdpRiFqDGIYIvqK
ChainResidueDetails
AEGLN154-LYS175
site_idPS00712
Number of Residues16
DetailsRIBOSOMAL_S17E Ribosomal protein S17e signature. IeSKiIRNrVAGYvTR
ChainResidueDetails
BSILE41-ARG56
site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. IRGMLPykrarGRdamsrLkVYvG
ChainResidueDetails
AGILE80-GLY103
site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NtkeRryAIrSAIaATTdptlvslRGH
ChainResidueDetails
ACASN106-HIS132
site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IdEYLAAGVHIG
ChainResidueDetails
BBILE40-GLY51
site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdvIIVtDpagDaqvLkEassiGVP
ChainResidueDetails
BBPRO143-PRO167
site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGPvcGKpftiaaMaIlDvG
ChainResidueDetails
AWGLU70-GLY90
site_idPS01073
Number of Residues18
DetailsRIBOSOMAL_L24E Ribosomal protein L24e signature. FcGkmLePGtGklYvKkD
ChainResidueDetails
ATPHE8-ASP25
site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSmGkRqkrt.HakCrRCG
ChainResidueDetails
AZGLY4-GLY23
site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. SeekkAPYifIkNQkeLG
ChainResidueDetails
AFSER68-GLY85
site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KrLeaPSrnYAaVNIsKI
ChainResidueDetails
AMLYS41-ILE58
site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVkVMrGdfKGte.GkV
ChainResidueDetails
ASGLY50-VAL67
site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VKLDksINeHlWeKG
ChainResidueDetails
AXVAL49-GLY63
site_idPS01168
Number of Residues33
DetailsRIBOSOMAL_S27E Ribosomal protein S27e signature. KCndCeneqiiFGsAsrkitCvvCGrtLaePtG
ChainResidueDetails
BXLYS16-GLY48
site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GQmVhididpsvqk.GmpNpkFqGsTG
ChainResidueDetails
APGLY37-GLY62
site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LvGRNvEtTVgEL
ChainResidueDetails
BALEU43-LEU55
site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RkaTGGkvita.RgKrKfEMG
ChainResidueDetails
BKARG9-GLY28
site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DRARsLGYkAkqGIVVVRvNVrRG
ChainResidueDetails
AJASP48-GLY71
site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRvssGMRrAFGKNvGtaARV
ChainResidueDetails
AKALA106-VAL127
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues233
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues60
DetailsCompositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues12
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues30
DetailsZinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues18
DetailsZinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues63
DetailsDomain: {"description":"S4 RNA-binding","evidences":[{"source":"HAMAP-Rule","id":"MF_00485","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues63
DetailsDomain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues22
DetailsZinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

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PDB entries from 2026-01-28

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