Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9ZN8

Structure of rabbit RyR1 complexed with FKBP12.6 and calmodulin in the presence of ATP, ADP, and Mg2+ (mimicking physiological conditions)

This is a non-PDB format compatible entry.

Functional Information from PROSITE/UniProt

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DKDGDGTITtkEL

Chain	Residue	Details
L	ASP20-LEU32
L	ASP56-PHE68
L	ASP93-LEU105
L	ASP129-PHE141

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	140
Details	Domain: {"description":"EF-hand 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	140
Details	Domain: {"description":"EF-hand 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	140
Details	Domain: {"description":"EF-hand 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	40
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1474585","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25441029","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27564677","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1CLL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4UMO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V0C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5J03","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1474585","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27564677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29724949","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"40328314","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1CLL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5J03","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6CNN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6CNO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"9D9Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"9NWE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"1474585","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27564677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"40328314","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1CLL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5J03","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"9D9Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"9NWE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	4
Details	Modified residue: {"description":"N-acetylalanine","evidences":[{"source":"PubMed","id":"7093203","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Bensaad K.","Vousden K.H."]}},{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"22223895","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"25944712","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Modified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	4
Details	Modified residue: {"description":"Phosphothreonine; by CaMK4","evidences":[{"source":"UniProtKB","id":"P0DP29","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	4
Details	Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	4
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"21406692","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	4
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI15
Number of Residues	4
Details	Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"24129315","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI16
Number of Residues	4
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI17
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P62157","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI18
Number of Residues	352
Details	Domain: {"description":"PPIase FKBP-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00277","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI19
Number of Residues	80
Details	Transmembrane: {"description":"Helical; Name=1","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI20
Number of Residues	80
Details	Transmembrane: {"description":"Helical; Name=2","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI21
Number of Residues	88
Details	Transmembrane: {"description":"Helical; Name=3","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI22
Number of Residues	168
Details	Topological domain: {"description":"Lumenal","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI23
Number of Residues	64
Details	Transmembrane: {"description":"Helical; Name=4","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI24
Number of Residues	440
Details	Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI25
Number of Residues	80
Details	Transmembrane: {"description":"Helical; Name=5","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI26
Number of Residues	76
Details	Intramembrane: {"description":"Pore-forming","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI27
Number of Residues	80
Details	Transmembrane: {"description":"Helical; Name=6","evidences":[{"source":"PubMed","id":"25470059","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27468892","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI28
Number of Residues	220
Details	Domain: {"description":"MIR 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI29
Number of Residues	180
Details	Domain: {"description":"MIR 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI30
Number of Residues	216
Details	Domain: {"description":"MIR 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI31
Number of Residues	864
Details	Domain: {"description":"B30.2/SPRY 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00548","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI32
Number of Residues	452
Details	Repeat: {"description":"1"}

Chain

Residue

Details

site_id	SWS_FT_FI33
Number of Residues	112
Details	Domain: {"description":"EF-hand","evidences":[{"source":"PROSITE-ProRule","id":"PRU00448","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI34
Number of Residues	44
Details	Region: {"description":"Interaction with FKBP1A","evidences":[{"source":"PubMed","id":"26245150","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI35
Number of Residues	24
Details	Motif: {"description":"Selectivity filter","evidences":[{"source":"PubMed","id":"25517095","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27573175","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27662087","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

site_id	SWS_FT_FI36
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27662087","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5TA3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAN","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI37
Number of Residues	60
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27662087","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5T9V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TA3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TAU","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI38
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27662087","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5TAN","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI39
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"F1LMY4","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI40
Number of Residues	4
Details	Modified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"PubMed","id":"10601232","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11562475","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22036948","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI41
Number of Residues	4
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P21817","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI42
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P21817","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)