Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9YXB

Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
La	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
La	0003729	molecular_function	mRNA binding
La	0003735	molecular_function	structural constituent of ribosome
La	0022625	cellular_component	cytosolic large ribosomal subunit
Lb	0002181	biological_process	cytoplasmic translation
Lb	0003735	molecular_function	structural constituent of ribosome
Lb	0022625	cellular_component	cytosolic large ribosomal subunit
LB	0002181	biological_process	cytoplasmic translation
LB	0003723	molecular_function	RNA binding
LB	0003735	molecular_function	structural constituent of ribosome
LB	0022625	cellular_component	cytosolic large ribosomal subunit
Lc	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Lc	0003723	molecular_function	RNA binding
Lc	0003735	molecular_function	structural constituent of ribosome
Lc	0022625	cellular_component	cytosolic large ribosomal subunit
LC	0003723	molecular_function	RNA binding
LC	0003735	molecular_function	structural constituent of ribosome
LC	0006412	biological_process	translation
LC	0022625	cellular_component	cytosolic large ribosomal subunit
Le	0002181	biological_process	cytoplasmic translation
Le	0003735	molecular_function	structural constituent of ribosome
Le	0022625	cellular_component	cytosolic large ribosomal subunit
LE	0005634	cellular_component	nucleus
LE	0005737	cellular_component	cytoplasm
Lf	0022625	cellular_component	cytosolic large ribosomal subunit
LF	0002181	biological_process	cytoplasmic translation
LF	0003735	molecular_function	structural constituent of ribosome
LF	0022625	cellular_component	cytosolic large ribosomal subunit
LG	0000027	biological_process	ribosomal large subunit assembly
LG	0002181	biological_process	cytoplasmic translation
LG	0003723	molecular_function	RNA binding
LG	0003735	molecular_function	structural constituent of ribosome
LG	0022625	cellular_component	cytosolic large ribosomal subunit
LH	0003723	molecular_function	RNA binding
LH	0022625	cellular_component	cytosolic large ribosomal subunit
LI	0003729	molecular_function	mRNA binding
LI	0003735	molecular_function	structural constituent of ribosome
LI	0005840	cellular_component	ribosome
LI	0017148	biological_process	negative regulation of translation
LI	0022625	cellular_component	cytosolic large ribosomal subunit
Lj	0003723	molecular_function	RNA binding
Lj	0022625	cellular_component	cytosolic large ribosomal subunit
LJ	0003723	molecular_function	RNA binding
LJ	0003735	molecular_function	structural constituent of ribosome
LJ	0022625	cellular_component	cytosolic large ribosomal subunit
Lk	0003735	molecular_function	structural constituent of ribosome
Lk	0022618	biological_process	protein-RNA complex assembly
Lk	0022625	cellular_component	cytosolic large ribosomal subunit
LK	0003735	molecular_function	structural constituent of ribosome
LK	0022625	cellular_component	cytosolic large ribosomal subunit
LK	0070180	molecular_function	large ribosomal subunit rRNA binding
Ll	0022625	cellular_component	cytosolic large ribosomal subunit
LL	0003723	molecular_function	RNA binding
LL	0003735	molecular_function	structural constituent of ribosome
LL	0022625	cellular_component	cytosolic large ribosomal subunit
LL	0042273	biological_process	ribosomal large subunit biogenesis
LM	0003735	molecular_function	structural constituent of ribosome
LM	0022625	cellular_component	cytosolic large ribosomal subunit
LN	0002181	biological_process	cytoplasmic translation
LN	0003723	molecular_function	RNA binding
LN	0003735	molecular_function	structural constituent of ribosome
LN	0022625	cellular_component	cytosolic large ribosomal subunit
LP	0000027	biological_process	ribosomal large subunit assembly
LP	0003735	molecular_function	structural constituent of ribosome
LP	0005634	cellular_component	nucleus
LP	0005737	cellular_component	cytoplasm
LP	0008097	molecular_function	5S rRNA binding
LP	0022625	cellular_component	cytosolic large ribosomal subunit
LQ	0003723	molecular_function	RNA binding
LQ	0003735	molecular_function	structural constituent of ribosome
LQ	0005737	cellular_component	cytoplasm
LQ	0022625	cellular_component	cytosolic large ribosomal subunit
LU	0002181	biological_process	cytoplasmic translation
LU	0003735	molecular_function	structural constituent of ribosome
LU	0005737	cellular_component	cytoplasm
LU	0022625	cellular_component	cytosolic large ribosomal subunit
LU	0030684	cellular_component	preribosome
LV	0002181	biological_process	cytoplasmic translation
LV	0003723	molecular_function	RNA binding
LV	0003735	molecular_function	structural constituent of ribosome
LV	0005737	cellular_component	cytoplasm
SA	0003735	molecular_function	structural constituent of ribosome
SA	0005737	cellular_component	cytoplasm
SA	0006412	biological_process	translation
SA	0022627	cellular_component	cytosolic small ribosomal subunit
Sb	0003729	molecular_function	mRNA binding
Sb	0003735	molecular_function	structural constituent of ribosome
Sb	0022627	cellular_component	cytosolic small ribosomal subunit
SB	0000028	biological_process	ribosomal small subunit assembly
SB	0003735	molecular_function	structural constituent of ribosome
SB	0005737	cellular_component	cytoplasm
SB	0006412	biological_process	translation
SB	0022627	cellular_component	cytosolic small ribosomal subunit
SC	0003723	molecular_function	RNA binding
SC	0003735	molecular_function	structural constituent of ribosome
SC	0005634	cellular_component	nucleus
SC	0022627	cellular_component	cytosolic small ribosomal subunit
Sd	0000028	biological_process	ribosomal small subunit assembly
Sd	0003735	molecular_function	structural constituent of ribosome
Sd	0022627	cellular_component	cytosolic small ribosomal subunit
Sd	0030490	biological_process	maturation of SSU-rRNA
SD	0003735	molecular_function	structural constituent of ribosome
SD	0015935	cellular_component	small ribosomal subunit
SD	0019843	molecular_function	rRNA binding
SD	0022627	cellular_component	cytosolic small ribosomal subunit
SD	0042274	biological_process	ribosomal small subunit biogenesis
SD	0043226	cellular_component	organelle
Se	0003735	molecular_function	structural constituent of ribosome
Se	0005737	cellular_component	cytoplasm
Se	0022627	cellular_component	cytosolic small ribosomal subunit
SE	0003723	molecular_function	RNA binding
SE	0003735	molecular_function	structural constituent of ribosome
SE	0006412	biological_process	translation
SE	0022627	cellular_component	cytosolic small ribosomal subunit
SF	0003735	molecular_function	structural constituent of ribosome
SF	0005737	cellular_component	cytoplasm
SF	0006412	biological_process	translation
SF	0022627	cellular_component	cytosolic small ribosomal subunit
SF	1990904	cellular_component	ribonucleoprotein complex
Sg	0006417	biological_process	regulation of translation
SI	0006364	biological_process	rRNA processing
SI	0022627	cellular_component	cytosolic small ribosomal subunit
SI	0030686	cellular_component	90S preribosome
SI	0032040	cellular_component	small-subunit processome
SI	0042274	biological_process	ribosomal small subunit biogenesis
SL	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
SL	0003723	molecular_function	RNA binding
SL	0003735	molecular_function	structural constituent of ribosome
SL	0015935	cellular_component	small ribosomal subunit
SL	0022627	cellular_component	cytosolic small ribosomal subunit
SM	0005737	cellular_component	cytoplasm
SM	0005829	cellular_component	cytosol
SM	0005840	cellular_component	ribosome
SO	0009507	cellular_component	chloroplast
SR	0005737	cellular_component	cytoplasm
SR	0005829	cellular_component	cytosol
SR	0015935	cellular_component	small ribosomal subunit
SS	0002181	biological_process	cytoplasmic translation
SS	0003735	molecular_function	structural constituent of ribosome
SS	0008270	molecular_function	zinc ion binding
SS	0022627	cellular_component	cytosolic small ribosomal subunit
ST	0003735	molecular_function	structural constituent of ribosome
ST	0005730	cellular_component	nucleolus
ST	0022627	cellular_component	cytosolic small ribosomal subunit
ST	0070181	molecular_function	small ribosomal subunit rRNA binding
SU	0003735	molecular_function	structural constituent of ribosome
SU	0005737	cellular_component	cytoplasm
SU	0022626	cellular_component	cytosolic ribosome
SU	0022627	cellular_component	cytosolic small ribosomal subunit
SW	0000028	biological_process	ribosomal small subunit assembly
SW	0003735	molecular_function	structural constituent of ribosome
SW	0022627	cellular_component	cytosolic small ribosomal subunit
SX	0000028	biological_process	ribosomal small subunit assembly
SX	0003723	molecular_function	RNA binding
SX	0003735	molecular_function	structural constituent of ribosome
SX	0022627	cellular_component	cytosolic small ribosomal subunit
SY	0005737	cellular_component	cytoplasm

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrqrkawrrr.DGyfiyFedNagVI

Chain	Residue	Details
LK	ALA78-ILE104

site_id	PS00051
Number of Residues	17
Details	RIBOSOMAL_L39E Ribosomal protein L39e signature. KTdskIryNakrRYWRR

Chain	Residue	Details
Ll	LYS38-ARG54

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLvnsMMmhgrnnGKKlkairIVmhA

Chain	Residue	Details
SH	GLU58-ALA84

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrSLarS.GLkIgrieDvTPiPTD

Chain	Residue	Details
SO	LEU122-ASP144

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAyR

Chain	Residue	Details
SP	LYS62-ARG69

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgQcRPLS

Chain	Residue	Details
SU	GLY118-SER130

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqyinveIkpemVGyyIGEFsiT

Chain	Residue	Details
SW	ASN102-THR126

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGftSQvyAirqAiSKAV

Chain	Residue	Details
SL	GLY77-VAL95

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. MrkHMehnLnDkdSkfrLilLesrihrLarY

Chain	Residue	Details
ST	MET98-TYR128

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVTmNPvD

Chain	Residue	Details
LB	PRO197-ASP208

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FgsnetiDvlGvTkGHGmkGvisR

Chain	Residue	Details
LC	PHE207-ARG230

site_id	PS00475
Number of Residues	32
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGtGkMpqrp.LiVkarfFSklAekkIkeaG

Chain	Residue	Details
LM	LYS109-GLY140

site_id	PS00526
Number of Residues	20
Details	RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvlkCGkgrVWLDP

Chain	Residue	Details
LR	GLN19-PRO38

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. RvCfnrhglirkyg.LSICRqCFR

Chain	Residue	Details
SS	ARG20-ARG42

site_id	PS00528
Number of Residues	15
Details	RIBOSOMAL_S4E Ribosomal protein S4e signature. HmKRINaPshWlLdK

Chain	Residue	Details
SE	HIS14-LYS28

site_id	PS00578
Number of Residues	12
Details	RIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM

Chain	Residue	Details
SG	ILE52-MET63

site_id	PS00580
Number of Residues	21
Details	RIBOSOMAL_L32E Ribosomal protein L32e signature. FrRfqsdRfkRVken..WRKpkG

Chain	Residue	Details
Lf	PHE17-GLY37

site_id	PS00628
Number of Residues	20
Details	RIBOSOMAL_S19E Ribosomal protein S19e signature. PnhsclaSgkIiRtIVQqLE

Chain	Residue	Details
SX	PRO111-GLU130

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. MErRLqtkVFKlglAkSihhARcMI

Chain	Residue	Details
SD	MET105-ILE129

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. ILklFrLlQlhNgVfikmnkatseMLklInpYV

Chain	Residue	Details
Lc	ILE113-VAL145

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHywGlrTRGQ

Chain	Residue	Details
SR	ARG123-GLN136

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. VISAsrDkKLMIWEV

Chain	Residue	Details
Sg	VAL34-VAL48
Sg	ALA83-LEU97
Sg	ILE125-THR139
Sg	CYS212-MET226

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QcalVrnKdiRqFlDGIYVseK

Chain	Residue	Details
LF	GLN162-LYS183

site_id	PS00712
Number of Residues	16
Details	RIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKrMRNkVAGFiTH

Chain	Residue	Details
SV	ILE41-HIS56

site_id	PS00733
Number of Residues	8
Details	RIBOSOMAL_S26E Ribosomal protein S26e signature. YCISCAIH

Chain	Residue	Details
Sb	TYR73-HIS80

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NlkeKrkALaAAVaATAvvplvmaRGH

Chain	Residue	Details
LD	ASN115-HIS141

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREARrL

Chain	Residue	Details
Sd	GLU58-LEU66

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IrMMLTCKVHIG

Chain	Residue	Details
SB	ILE18-GLY29

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. DLGTvcGKyfrvgcMaVlDaG

Chain	Residue	Details
Ld	ASP79-GLY99

site_id	PS00996
Number of Residues	9
Details	RIBOSOMAL_S21E Ribosomal protein S21e signature. LYIPRKCSA

Chain	Residue	Details
SY	LEU11-ALA19

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTgSfGlRngkt.HilCrRCG

Chain	Residue	Details
Lj	GLY7-GLY26

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkkeVPYciIkGKsrLG

Chain	Residue	Details
LH	CYS190-GLY207

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. RmGRGFTLqELkaaG

Chain	Residue	Details
LJ	ARG68-GLY82

site_id	PS01105
Number of Residues	22
Details	RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKIrRpHGngGtVrAsFrknLP

Chain	Residue	Details
Lg	GLY77-PRO98

site_id	PS01145
Number of Residues	14
Details	RIBOSOMAL_L34E Ribosomal protein L34e signature. TkSnKqrvvKTPGG

Chain	Residue	Details
Lh	THR15-GLY28

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GDyVdvlcdpsvhk.GmpYsyYhGkTG

Chain	Residue	Details
LT	GLY37-GLY62

site_id	PS01172
Number of Residues	12
Details	RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLKleC

Chain	Residue	Details
Lo	LYS62-CYS73

site_id	PS01191
Number of Residues	13
Details	RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkNRVfEiSLaDL

Chain	Residue	Details
SA	LEU61-LEU73

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRIkRG

Chain	Residue	Details
LN	ASP46-GLY69

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRrAFGKPnGvvARV

Chain	Residue	Details
LO	ALA108-VAL129

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)