9YNW

Tra1, Core and minimal HAT modules of ctSAGA, composite.

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000124	cellular_component	SAGA complex
A	0005634	cellular_component	nucleus
A	0006281	biological_process	DNA repair
A	0006355	biological_process	regulation of DNA-templated transcription
A	0035267	cellular_component	NuA4 histone acetyltransferase complex
B	0000124	cellular_component	SAGA complex
B	0003712	molecular_function	transcription coregulator activity
B	0006357	biological_process	regulation of transcription by RNA polymerase II
C	0000124	cellular_component	SAGA complex
C	0003712	molecular_function	transcription coregulator activity
C	0005634	cellular_component	nucleus
C	0006351	biological_process	DNA-templated transcription
C	0006357	biological_process	regulation of transcription by RNA polymerase II
C	0006366	biological_process	transcription by RNA polymerase II
D	0003743	molecular_function	translation initiation factor activity
D	0005634	cellular_component	nucleus
D	0005669	cellular_component	transcription factor TFIID complex
D	0006351	biological_process	DNA-templated transcription
D	0006367	biological_process	transcription initiation at RNA polymerase II promoter
D	0006413	biological_process	translational initiation
D	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
E	0000124	cellular_component	SAGA complex
E	0003713	molecular_function	transcription coactivator activity
E	0003743	molecular_function	translation initiation factor activity
E	0005634	cellular_component	nucleus
E	0005669	cellular_component	transcription factor TFIID complex
E	0006325	biological_process	chromatin organization
E	0006351	biological_process	DNA-templated transcription
E	0006367	biological_process	transcription initiation at RNA polymerase II promoter
E	0006413	biological_process	translational initiation
E	0010468	biological_process	regulation of gene expression
E	0010557	biological_process	positive regulation of macromolecule biosynthetic process
E	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
E	0045893	biological_process	positive regulation of DNA-templated transcription
E	0051123	biological_process	RNA polymerase II preinitiation complex assembly
G	0000124	cellular_component	SAGA complex
G	0005634	cellular_component	nucleus
G	0005669	cellular_component	transcription factor TFIID complex
G	0006351	biological_process	DNA-templated transcription
G	0006367	biological_process	transcription initiation at RNA polymerase II promoter
G	0016251	molecular_function	RNA polymerase II general transcription initiation factor activity
G	1990841	molecular_function	promoter-specific chromatin binding
H	0000124	cellular_component	SAGA complex
H	0003713	molecular_function	transcription coactivator activity
H	0005634	cellular_component	nucleus
H	0006351	biological_process	DNA-templated transcription
H	0006357	biological_process	regulation of transcription by RNA polymerase II
H	0045893	biological_process	positive regulation of DNA-templated transcription
I	0003677	molecular_function	DNA binding
I	0005634	cellular_component	nucleus
I	0005669	cellular_component	transcription factor TFIID complex
I	0006351	biological_process	DNA-templated transcription
I	0017025	molecular_function	TBP-class protein binding
I	0051123	biological_process	RNA polymerase II preinitiation complex assembly
K	0000124	cellular_component	SAGA complex
K	0005198	molecular_function	structural molecule activity
K	0005634	cellular_component	nucleus
K	0006325	biological_process	chromatin organization
K	0006351	biological_process	DNA-templated transcription
K	0006357	biological_process	regulation of transcription by RNA polymerase II
M	0003682	molecular_function	chromatin binding
M	0003713	molecular_function	transcription coactivator activity
M	0005634	cellular_component	nucleus
M	0006338	biological_process	chromatin remodeling
M	0006351	biological_process	DNA-templated transcription
M	0006357	biological_process	regulation of transcription by RNA polymerase II
M	0008270	molecular_function	zinc ion binding
M	0045893	biological_process	positive regulation of DNA-templated transcription
M	0046872	molecular_function	metal ion binding
M	0070461	cellular_component	SAGA-type complex
N	0000123	cellular_component	histone acetyltransferase complex
N	0005634	cellular_component	nucleus
N	0006325	biological_process	chromatin organization
N	0006338	biological_process	chromatin remodeling
N	0006351	biological_process	DNA-templated transcription
N	0010484	molecular_function	histone H3 acetyltransferase activity
N	0016740	molecular_function	transferase activity
N	0016746	molecular_function	acyltransferase activity
N	0045944	biological_process	positive regulation of transcription by RNA polymerase II
N	0061733	molecular_function	protein-lysine-acetyltransferase activity
O	0000124	cellular_component	SAGA complex
O	0003713	molecular_function	transcription coactivator activity
O	0005634	cellular_component	nucleus
O	0006351	biological_process	DNA-templated transcription
O	0006357	biological_process	regulation of transcription by RNA polymerase II
O	0045893	biological_process	positive regulation of DNA-templated transcription
Q	0000124	cellular_component	SAGA complex
Q	0006357	biological_process	regulation of transcription by RNA polymerase II
Q	0031048	biological_process	regulatory ncRNA-mediated heterochromatin formation
Q	1904802	biological_process	RITS complex assembly

Functional Information from PROSITE/UniProt

site_id	PS00633
Number of Residues	58
Details	BROMODOMAIN_1 Bromodomain signature. StpFlqrvSkreap..DYYtfIkqpMdlgtMtkklkslq..Ykskaefvydlnl.IwdNClkY

Chain	Residue	Details
K	SER353-TYR410
N	SER314-TYR371

---

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. LVSGglDcTVRVWDI

Chain	Residue	Details
D	LEU639-ILE653

---

site_id	PS00867
Number of Residues	8
Details	CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LNEVNVRA

Chain	Residue	Details
Q	LEU1094-ALA1101

---

site_id	PS01357
Number of Residues	30
Details	ZF_ZZ_1 Zinc finger ZZ-type signature. CdvCsvditstvRIrCadpa.ChDYdLCvpC

Chain	Residue	Details
M	CYS21-CYS50

---